Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 0.0e+00 1264.6 644 100.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 7.2e-281 970.3 641 78.9
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 2.9e-269 931.8 621 77.3
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 3.6e-240 835.1 580 76.2
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 3.4e-238 828.6 642 67.8
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 2.3e-226 789.3 648 66.4
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 9.6e-225 783.9 637 67.8
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 4.8e-224 781.6 641 65.4
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 3.4e-222 775.4 641 64.7
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 4.2e-220 768.5 641 63.5
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.9e-218 761.9 623 64.8
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.5e-217 760.0 639 64.3
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 2.5e-217 759.2 640 63.6
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 3.7e-216 755.4 641 61.3
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 4.5e-214 748.4 643 62.1
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 4.3e-209 731.9 637 61.2
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 5.7e-209 731.5 498 76.5
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 8.2e-208 727.6 649 61.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 8.2e-208 727.6 677 58.8
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 3.1e-207 725.7 647 60.0
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 9.0e-207 724.2 639 60.7
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.6e-206 722.6 643 61.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.4e-206 722.2 643 61.6
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 7.7e-206 721.1 648 60.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 3.8e-205 718.8 639 60.3
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 3.2e-204 715.7 647 60.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 4.2e-204 715.3 644 61.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.6e-203 713.4 649 59.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 3.6e-203 712.2 641 60.2
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 5.7e-201 704.9 619 61.9
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.8e-200 702.6 642 59.7
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 4.8e-200 701.8 646 58.5
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 9.1e-199 697.6 640 59.1
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.2e-198 697.2 640 61.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.5e-198 696.8 580 64.3
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.6e-198 696.0 636 60.7
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 4.5e-198 695.3 642 59.2
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 5.9e-198 694.9 649 59.5
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 7.7e-198 694.5 627 60.6
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 1.7e-197 693.3 643 59.4
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-196 690.6 635 59.5
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.5e-196 689.5 638 60.3
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 3.2e-196 689.1 630 60.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 1.6e-195 686.8 623 58.4
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.6e-195 686.8 620 59.5
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.1e-195 686.4 625 58.7
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.0e-194 684.1 624 58.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.9e-194 682.2 638 57.8
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 6.7e-194 681.4 639 58.1
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 6.7e-194 681.4 618 60.8
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.1e-193 680.6 649 58.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 4.4e-193 678.7 641 58.2
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 7.4e-193 677.9 620 59.5
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-192 676.0 647 58.1
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 3.1e-191 672.5 640 59.2
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 9.1e-191 671.0 661 57.8
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 1.5e-190 670.2 640 59.5
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.7e-189 666.8 615 61.0
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 5.0e-189 665.2 643 56.5
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 5.0e-189 665.2 645 56.4
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.2e-188 662.5 581 60.4
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 7.2e-188 661.4 647 57.8
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 9.4e-188 661.0 648 56.3
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 1.8e-186 656.8 634 56.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.0e-185 653.3 622 57.6
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.0e-185 653.3 658 57.3
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 4.4e-185 652.1 649 55.6
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.7e-185 651.0 626 57.5
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 4.8e-184 648.7 699 53.6
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 3.1e-183 646.0 637 58.2
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.9e-181 639.4 631 57.2
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 6.5e-181 638.3 644 56.1
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 6.5e-181 638.3 579 61.0
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 4.2e-180 635.6 634 54.6
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 7.2e-180 634.8 649 53.9
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 3.6e-179 632.5 649 54.9
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.8e-178 630.2 608 58.6
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 2.3e-178 629.8 598 58.9
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 1.2e-177 627.5 619 55.3
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.0e-174 616.7 589 57.6
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.7e-174 616.3 644 53.3
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.3e-173 614.0 646 53.4
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 8.5e-173 611.3 651 53.0
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.1e-171 606.7 661 51.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.7e-171 606.3 564 57.1
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 3.6e-171 605.9 496 65.1
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.6e-171 605.9 627 54.1
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 8.0e-171 604.7 591 55.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 8.8e-170 601.3 645 52.9
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 3.7e-168 595.9 665 52.2
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.8e-167 593.6 656 52.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 9.1e-167 591.3 551 58.4
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 4.5e-166 589.0 657 51.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.0e-165 587.8 646 52.5
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.0e-165 587.8 562 56.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.3e-165 586.6 643 51.6
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 6.6e-165 585.1 657 51.6
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 2.5e-164 583.2 652 50.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 3.0e-162 576.2 643 50.2
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.0e-162 575.9 651 50.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 1.5e-161 573.9 651 50.1
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.6e-161 573.2 694 49.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.4e-159 566.6 638 50.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 7.0e-159 565.1 567 55.2
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.2e-158 564.3 719 48.8
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.0e-158 563.5 644 50.3
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 5.9e-158 562.0 514 58.6
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 7.8e-158 561.6 636 50.2
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 7.8e-158 561.6 636 50.2
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 2.9e-157 559.7 636 50.5
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 2.9e-157 559.7 636 50.5
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 5.0e-157 558.9 653 50.4
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.6e-157 558.1 642 54.5
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 8.6e-157 558.1 636 50.3
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-155 554.3 533 58.5
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 8.3e-152 541.6 500 58.4
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.4e-151 540.0 612 49.8
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 7.0e-151 538.5 643 49.1
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.2e-150 537.7 591 51.6
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.5e-150 536.2 532 56.2
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 3.1e-146 523.1 491 57.6
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 2.2e-144 516.9 616 49.2
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 3.7e-144 516.2 691 46.7
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.4e-144 515.4 526 52.9
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 5.1e-141 505.8 526 52.3
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.5e-134 483.0 422 60.0
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 6.4e-128 462.2 551 48.6
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 6.2e-123 445.7 488 52.0
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.9e-119 434.1 495 50.1
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.9e-119 434.1 495 50.1
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.5e-118 429.9 635 43.6
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.2e-113 414.8 483 49.7
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 7.6e-113 412.1 622 42.1
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 9.3e-111 405.2 708 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 5.1e-109 399.4 549 43.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 7.1e-103 379.0 391 52.7
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 3.7e-99 366.7 537 43.8
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 1.4e-69 268.5 595 34.6
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 2.6e-68 264.2 495 36.4
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.9e-63 248.1 357 41.7
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.0e-56 225.7 295 50.5
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.5e-47 195.3 194 52.1
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.2e-43 181.4 195 45.6
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 1.0e-40 172.6 127 70.1
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.5e-25 120.9 163 38.7
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.6e-23 113.6 64 84.4
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 8.9e-21 106.3 156 48.1
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 1.0e-16 92.8 124 49.2
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-08 65.9 39 66.7
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.6e-06 57.8 60 48.3
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 6.2e-06 57.0 70 51.4


User provided reference genes

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