Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-65 253.1 123 100.0
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.6e-22 109.0 97 62.9
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 8.2e-16 87.4 81 58.0
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.2e-14 83.6 102 52.9
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.5e-14 83.2 101 49.5
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 2.0e-14 82.8 108 47.2
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.6e-14 82.4 70 57.1
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.5e-14 81.6 75 53.3
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 7.7e-14 80.9 71 59.2
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.0e-13 80.5 71 59.2
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.3e-13 80.1 98 50.0
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.8e-13 78.6 102 47.1
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.8e-13 78.6 77 50.6
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 5.0e-13 78.2 91 50.5
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.5e-13 77.8 62 58.1
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 8.5e-13 77.4 59 62.7
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 8.5e-13 77.4 71 56.3
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.4e-12 76.6 79 55.7
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.9e-12 76.3 111 45.9
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 5.5e-12 74.7 84 48.8
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 5.5e-12 74.7 70 57.1
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.2e-12 74.3 112 42.9
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.2e-11 73.6 59 57.6
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.6e-11 73.2 60 60.0
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.1e-11 72.8 73 54.8
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.1e-11 72.8 62 61.3
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.1e-11 72.8 73 56.2
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.1e-11 72.8 73 56.2
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.7e-11 72.4 62 61.3
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 6.1e-11 71.2 57 61.4
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 7.9e-11 70.9 81 50.6
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 7.9e-11 70.9 73 50.7
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 7.9e-11 70.9 72 55.6
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 7.9e-11 70.9 59 55.9
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 3.0e-10 68.9 59 61.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.9e-10 68.6 87 46.0
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 5.1e-10 68.2 78 52.6
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.1e-10 68.2 96 47.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 5.1e-10 68.2 78 50.0
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 5.1e-10 68.2 82 50.0
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.1e-09 67.0 76 50.0
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 1.1e-09 67.0 76 46.1
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.1e-09 67.0 94 45.7
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.1e-09 67.0 65 53.8
FAN16G1536 Fragaria x ananassa HOM05D025255 ORTHO05D004438 1.5e-09 66.6 78 52.6
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.5e-09 66.6 62 58.1
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.0e-09 66.2 96 45.8
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-09 66.2 87 43.7
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.0e-09 66.2 57 57.9
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 2.6e-09 65.9 64 56.2
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.6e-09 65.9 67 56.7
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 2.6e-09 65.9 74 43.2
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 3.3e-09 65.5 65 47.7
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 3.3e-09 65.5 78 48.7
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 4.4e-09 65.1 83 49.4
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 4.4e-09 65.1 96 44.8
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 5.7e-09 64.7 62 51.6
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 1.3e-08 63.5 62 46.8
ClCG01G013950 Citrullus lanatus HOM05D026992 ORTHO05D004438 1.7e-08 63.2 74 47.3
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-08 63.2 67 50.7
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.7e-08 63.2 71 50.7
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.2e-08 62.8 72 45.8
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.2e-08 62.8 74 43.2
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.2e-08 62.8 100 37.0
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 2.2e-08 62.8 84 45.2
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.2e-08 62.8 62 54.8
MELO3C035553.2 Cucumis melo HOM05D026992 ORTHO05D004438 2.8e-08 62.4 80 46.2
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.8e-08 62.4 54 57.4
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.8e-08 62.4 70 47.1
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.8e-08 62.4 67 50.7
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.8e-08 61.6 80 47.5
Haze_23519 Corylus avellana HOM05D005304 ORTHO05D004438 6.3e-08 61.2 145 33.1
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.3e-08 61.2 69 47.8
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 6.3e-08 61.2 80 47.5
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.3e-08 61.2 80 47.5
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 6.3e-08 61.2 54 53.7
Potri.001G212300 Populus trichocarpa HOM05D005304 ORTHO05D004438 6.3e-08 61.2 138 34.8
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 6.3e-08 61.2 87 47.1
Cfa010131 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.1e-07 60.5 58 51.7
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.1e-07 60.5 74 40.5
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.1e-07 60.5 61 50.8
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 1.4e-07 60.1 62 41.9
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.4e-07 59.3 59 50.8
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 3.1e-07 58.9 72 45.8
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 4.1e-07 58.5 54 57.4
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.1e-07 58.5 78 44.9
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.1e-07 58.5 78 44.9
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 5.3e-07 58.2 78 44.9
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 7.0e-07 57.8 69 46.4
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 7.0e-07 57.8 56 53.6
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 7.0e-07 57.8 59 49.2
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 9.1e-07 57.4 54 55.6
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 9.1e-07 57.4 70 42.9
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 9.1e-07 57.4 92 42.4
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 9.1e-07 57.4 74 44.6
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.2e-06 57.0 75 42.7
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-06 57.0 54 46.3
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.2e-06 57.0 56 48.2
VMungo1127G0478 Vigna mungo HOM05D014522 ORTHO05D004438 1.2e-06 57.0 74 47.3
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.5e-06 56.6 59 49.2
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.5e-06 56.6 58 41.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 1.5e-06 56.6 59 50.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 2.0e-06 56.2 77 45.5
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.0e-06 56.2 82 41.5
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 2.0e-06 56.2 88 42.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 2.0e-06 56.2 62 51.6
Thhalv10009156m.g Eutrema salsugineum HOM05D010843 ORTHO05D012975 2.6e-06 55.8 55 54.5
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.6e-06 55.8 57 52.6
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.6e-06 55.8 56 50.0
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.6e-06 55.8 56 50.0
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.6e-06 55.8 66 43.9
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 3.4e-06 55.5 61 45.9
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.4e-06 55.5 66 47.0
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.4e-06 55.5 74 44.6
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 3.4e-06 55.5 58 46.6
CsaV3_1G014250 Cucumis sativus L. HOM05D026992 ORTHO05D004438 4.5e-06 55.1 53 54.7
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 4.5e-06 55.1 92 42.4
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 4.5e-06 55.1 70 44.3
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 5.9e-06 54.7 74 40.5
A08p35300 Brassica napus HOM05D010843 ORTHO05D012975 7.7e-06 54.3 55 52.7
C08p03530 Brassica napus HOM05D010843 ORTHO05D012975 7.7e-06 54.3 55 52.7
BolC8t47157H Brassica oleracea HOM05D010843 ORTHO05D012975 7.7e-06 54.3 55 52.7
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-06 54.3 61 44.3
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.7e-06 54.3 61 44.3


User provided reference genes

Program Settings