Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.6e-115 417.9 212 100.0
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.2e-96 356.7 213 84.5
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.8e-96 355.5 215 84.7
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.4e-95 353.2 212 84.0
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.0e-95 351.7 210 83.8
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 4.0e-95 351.7 212 83.5
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.2e-95 351.3 215 85.1
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.5e-94 349.7 213 84.5
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.5e-94 349.7 213 84.0
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 5.8e-94 347.8 213 84.0
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.7e-93 346.3 214 83.6
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.7e-93 346.3 212 82.5
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.9e-93 345.5 212 84.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 4.9e-93 344.7 216 82.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 3.2e-92 342.0 212 82.1
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 9.3e-92 340.5 213 82.6
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 9.3e-92 340.5 213 82.6
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.7e-91 339.0 210 82.9
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 4.6e-91 338.2 213 83.6
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 6.0e-91 337.8 213 80.3
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 7.8e-91 337.4 214 81.8
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.0e-90 337.0 212 81.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.0e-90 337.0 213 82.2
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.9e-90 335.1 213 83.1
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 5.1e-90 334.7 212 80.7
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.1e-90 334.7 214 79.9
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 6.6e-90 334.3 212 83.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 1.9e-89 332.8 214 81.8
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.9e-89 332.8 212 80.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.5e-89 332.4 214 80.8
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 4.3e-89 331.6 215 80.5
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 5.6e-89 331.3 214 80.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.3e-88 330.1 212 81.1
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.6e-88 329.7 212 82.5
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.6e-88 329.7 211 82.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.8e-88 328.9 217 81.1
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.8e-88 328.9 217 81.1
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 3.6e-88 328.6 213 81.7
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.8e-88 328.2 217 81.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.8e-88 328.2 215 79.5
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 4.8e-88 328.2 215 80.0
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.2e-88 327.8 215 80.0
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 8.1e-88 327.4 215 80.0
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.1e-88 327.4 215 80.0
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 8.1e-88 327.4 211 81.0
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 1.1e-87 327.0 215 80.0
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.4e-87 326.6 213 81.7
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.4e-87 326.6 212 81.1
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.8e-87 326.2 212 80.2
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.4e-87 325.9 217 79.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.1e-87 325.5 212 80.2
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.1e-87 325.5 215 79.5
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 4.0e-87 325.1 223 78.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 6.9e-87 324.3 219 79.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 9.0e-87 323.9 212 78.3
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 9.0e-87 323.9 213 78.9
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-86 323.6 212 79.7
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.2e-86 323.6 213 80.3
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.2e-86 323.6 210 79.5
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-86 323.2 215 79.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.5e-86 323.2 215 79.1
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.5e-86 323.2 214 78.5
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.0e-86 322.8 212 80.2
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.0e-86 322.8 214 79.4
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.0e-86 322.8 211 80.6
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.0e-86 322.8 213 79.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.6e-86 322.4 211 78.7
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 3.4e-86 322.0 216 80.1
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.4e-86 321.6 213 80.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.6e-86 320.9 215 79.1
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 9.9e-86 320.5 217 79.7
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 9.9e-86 320.5 212 77.8
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 9.9e-86 320.5 215 80.0
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-85 320.1 215 78.6
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 213 78.9
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.3e-85 320.1 213 78.9
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 2.2e-85 319.3 216 81.0
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.9e-85 318.9 193 82.9
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.8e-85 318.5 223 77.1
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 4.9e-85 318.2 212 78.8
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.4e-85 317.8 203 83.3
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.4e-85 317.4 214 79.0
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-84 316.6 203 82.8
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.9e-84 316.2 213 78.4
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 203 82.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.4e-84 315.8 203 82.8
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.2e-84 315.5 213 79.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 4.2e-84 315.1 213 77.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 5.4e-84 314.7 211 77.7
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 7.1e-84 314.3 213 77.0
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.3e-84 313.9 214 76.6
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 9.3e-84 313.9 211 76.3
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.2e-83 313.5 185 85.4
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.6e-83 313.2 212 78.8
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.1e-83 312.8 201 80.1
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.7e-83 312.4 212 79.2
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.7e-82 309.7 225 77.3
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.7e-82 309.7 212 75.9
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.9e-82 308.5 215 76.3
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.3e-81 305.1 204 77.9
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.1e-80 302.8 213 76.1
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 2.8e-80 302.4 212 77.8
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 4.8e-80 301.6 212 75.5
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.1e-79 300.4 213 73.7
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.4e-79 300.1 214 74.8
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-79 300.1 218 73.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.4e-79 299.3 216 74.1
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.4e-79 299.3 217 73.7
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.9e-79 297.7 215 74.0
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.9e-79 297.7 216 73.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.2e-78 297.0 184 81.5
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 9.9e-78 293.9 212 74.5
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.3e-77 293.5 215 73.5
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.7e-77 293.1 214 73.4
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.2e-77 292.7 214 73.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.8e-77 292.0 181 82.3
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 8.4e-77 290.8 185 80.5
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 8.4e-77 290.8 215 73.5
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 8.4e-77 290.8 211 72.5
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.1e-76 290.4 214 73.4
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.1e-76 290.4 211 76.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.9e-76 289.7 213 73.7
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.4e-76 289.3 211 72.0
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 2.4e-76 289.3 215 73.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 3.2e-76 288.9 214 72.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 7.1e-76 287.7 212 73.6
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.6e-75 286.6 215 71.6
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 3.0e-74 282.3 213 71.8
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.5e-73 279.3 212 75.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.5e-73 279.3 212 75.0
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 4.0e-71 271.9 146 86.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.5e-70 270.0 215 71.2
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.6e-70 269.2 178 76.4
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.7e-69 266.5 178 75.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 3.8e-69 265.4 212 67.9
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.4e-68 263.5 160 80.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.4e-68 263.5 165 80.0
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.1e-68 261.2 218 66.5
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.7e-67 259.2 206 67.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 7.9e-67 257.7 147 83.0
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 7.9e-67 257.7 179 73.2
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.9e-65 253.1 204 71.1
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 6.2e-64 248.1 213 66.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.6e-59 233.4 130 86.2
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 7.9e-59 231.1 142 78.2
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.3e-58 230.3 174 67.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.7e-57 224.9 214 63.1
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 3.1e-55 219.2 156 69.2
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-47 194.1 210 55.7
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.9e-42 175.6 92 89.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.2e-32 143.3 74 91.9
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 5.0e-21 105.5 108 58.3
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.2e-20 102.8 108 58.3
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.2e-19 100.9 108 57.4
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.3e-10 70.1 97 49.5
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 9.2e-07 58.2 82 47.6


User provided reference genes

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