Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.7e-94 349.4 180 100.0
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 4.2e-85 318.2 199 86.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 9.3e-69 263.8 199 71.4
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 4.3e-66 255.0 184 72.8
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.2e-65 252.7 184 77.2
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.8e-62 241.9 198 63.6
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 6.5e-62 241.1 199 65.3
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.9e-61 239.6 199 64.3
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 2.5e-61 239.2 200 62.0
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 1.2e-60 236.9 199 64.3
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 2.7e-60 235.7 199 62.3
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 4.6e-60 235.0 200 60.5
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 7.9e-60 234.2 198 62.1
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 1.0e-59 233.8 199 62.3
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 2.3e-59 232.6 198 62.6
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.1e-59 231.5 200 60.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 5.1e-59 231.5 200 60.0
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 6.7e-59 231.1 207 60.4
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 1.1e-58 230.3 200 64.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 1.5e-58 229.9 184 68.5
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 2.2e-57 226.1 198 58.6
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 2.8e-57 225.7 199 59.3
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 2.8e-57 225.7 200 62.5
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 1.1e-56 223.8 201 60.7
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 1.4e-56 223.4 165 69.7
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.4e-56 223.4 200 60.0
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 2.4e-56 222.6 199 59.8
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 2.4e-56 222.6 199 59.8
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.1e-56 222.2 198 56.1
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 4.1e-56 221.9 200 59.5
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.2e-55 220.3 200 59.0
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.2e-55 220.3 198 56.1
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 1.7e-54 216.5 197 56.3
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 2.9e-54 215.7 199 58.3
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 5.0e-54 214.9 200 58.0
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 8.5e-54 214.2 199 56.8
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 1.4e-53 213.4 200 58.5
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 3.2e-53 212.2 196 58.7
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 3.2e-53 212.2 197 54.8
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 4.2e-53 211.8 200 57.5
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 4.7e-52 208.4 198 55.1
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 6.1e-52 208.0 205 54.1
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 6.1e-52 208.0 199 55.3
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 1.8e-51 206.5 144 74.3
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 6.7e-51 204.5 200 54.5
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 1.1e-50 203.8 199 56.3
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.0e-50 203.0 205 53.2
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.6e-50 202.6 200 54.0
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 4.4e-50 201.8 184 59.2
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 9.7e-50 200.7 144 77.8
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.3e-49 200.3 195 56.4
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 2.8e-49 199.1 175 56.6
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 3.7e-49 198.7 206 55.8
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 4.8e-49 198.4 199 54.3
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 6.3e-49 198.0 199 53.8
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 8.2e-49 197.6 197 55.3
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.8e-48 196.4 184 57.6
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 2.4e-48 196.1 238 47.1
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.4e-48 196.1 199 52.8
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 2.4e-48 196.1 180 53.9
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 1.2e-47 193.7 185 56.2
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 2.6e-47 192.6 196 51.0
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 3.5e-47 192.2 196 52.0
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 4.5e-47 191.8 154 64.9
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 7.7e-47 191.0 201 52.7
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 7.7e-47 191.0 181 55.2
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 1.3e-46 190.3 190 52.6
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.2e-46 189.5 185 55.7
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 2.9e-46 189.1 194 52.1
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 2.9e-46 189.1 197 52.8
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 3.8e-46 188.7 197 50.8
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 3.8e-46 188.7 184 57.1
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 6.5e-46 188.0 197 53.3
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 4.2e-45 185.3 196 50.5
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 7.2e-45 184.5 197 49.2
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 7.2e-45 184.5 197 49.7
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 7.2e-45 184.5 197 49.7
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 7.2e-45 184.5 197 49.7
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 2.7e-44 182.6 199 50.8
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 8.0e-44 181.0 199 50.8
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 1.4e-43 180.3 197 49.7
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 1.4e-43 180.3 197 49.2
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 1.4e-43 180.3 199 50.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.4e-43 180.3 200 50.0
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 2.3e-43 179.5 197 49.2
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 4.0e-43 178.7 184 53.3
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 4.0e-43 178.7 200 49.5
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 5.2e-43 178.3 232 45.7
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 3.3e-42 175.6 159 61.0
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.1e-40 170.6 184 51.1
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 4.5e-39 165.2 144 58.3
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 5.0e-38 161.8 143 60.8
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 8.0e-36 154.5 184 44.6
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.5e-34 150.2 142 55.6
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.4e-34 148.7 128 60.9
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.7e-33 146.7 166 50.0
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 8.3e-33 144.4 182 42.9
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 1.4e-32 143.7 189 42.9
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 2.4e-32 142.9 145 48.3
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.0e-30 137.5 144 53.5
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 9.5e-29 131.0 84 79.8
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 2.1e-28 129.8 154 48.7
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 8.0e-28 127.9 116 58.6
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 1.0e-27 127.5 186 43.5
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.8e-27 126.7 137 51.8
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 3.0e-27 125.9 184 41.8
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 4.0e-27 125.6 144 45.8
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 4.4e-26 122.1 87 64.4
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 1.4e-24 117.1 146 44.5
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.4e-24 117.1 115 53.0
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 5.0e-22 108.6 107 54.2
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.3e-19 99.8 91 49.5
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.0e-18 96.7 86 60.5
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 2.6e-18 96.3 87 55.2
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 2.9e-17 92.8 84 58.3
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 3.7e-17 92.4 151 35.8
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 2.4e-16 89.7 184 32.1
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 2.3e-14 83.2 60 65.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 3.0e-14 82.8 129 40.3
CBR_g30123 Chara braunii HOM05D006640 ORTHO05D008078 8.6e-14 81.3 187 28.9
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 1.5e-13 80.5 144 36.1
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 1.3e-09 67.4 42 81.0
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.9e-09 65.5 46 69.6
FvH4_6g22960 Fragaria vesca HOM05D006640 ORTHO05D008078 8.3e-09 64.7 55 58.2
Phvul.006G060400 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.0e-06 55.5 45 57.8


User provided reference genes

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