Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028124 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D004336 4.0e-165 584.7 300 100.0
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.5e-26 124.4 84 69.0
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.5e-26 124.4 84 69.0
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 3.8e-22 109.8 79 64.6
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 4.2e-21 106.3 80 66.2
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 7.1e-21 105.5 87 59.8
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 7.1e-21 105.5 79 63.3
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 1.3e-19 101.3 76 59.2
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 3.0e-19 100.1 124 52.4
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 3.9e-19 99.8 110 52.7
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 3.3e-18 96.7 115 47.8
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 9.6e-18 95.1 80 52.5
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 1.3e-17 94.7 76 57.9
CSS0013469 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D111170 1.6e-17 94.4 116 56.0
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 1.6e-17 94.4 121 50.4
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 2.1e-17 94.0 117 41.9
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 2.8e-17 93.6 65 64.6
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 3.6e-17 93.2 85 55.3
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 3.6e-17 93.2 86 51.2
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 3.6e-17 93.2 125 49.6
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 4.8e-17 92.8 77 57.1
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 6.2e-17 92.4 118 44.9
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 8.1e-17 92.0 120 47.5
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 8.1e-17 92.0 74 59.5
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 1.1e-16 91.7 136 40.4
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 1.1e-16 91.7 85 54.1
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.1e-16 91.7 85 54.1
Cpa.g.sc847.2 Carica papaya HOM05D003550 ORTHO05D004336 1.4e-16 91.3 120 51.7
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 1.4e-16 91.3 72 61.1
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 1.4e-16 91.3 82 50.0
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 1.4e-16 91.3 124 43.5
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 1.8e-16 90.9 120 45.0
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 1.8e-16 90.9 80 55.0
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 1.8e-16 90.9 124 46.8
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 3.1e-16 90.1 89 50.6
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 4.0e-16 89.7 80 55.0
CDE02G3571 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 4.0e-16 89.7 82 56.1
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 4.0e-16 89.7 121 44.6
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 5.3e-16 89.4 80 51.2
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 5.3e-16 89.4 66 60.6
CDE09G1076 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 6.9e-16 89.0 83 55.4
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 6.9e-16 89.0 118 49.2
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 6.9e-16 89.0 70 60.0
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 9.0e-16 88.6 70 60.0
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 9.0e-16 88.6 71 57.7
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 9.0e-16 88.6 66 62.1
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 9.0e-16 88.6 66 62.1
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 9.0e-16 88.6 87 51.7
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 9.0e-16 88.6 86 51.2
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 1.2e-15 88.2 77 55.8
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 1.2e-15 88.2 77 55.8
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 1.2e-15 88.2 121 44.6
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 1.2e-15 88.2 80 51.2
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 1.5e-15 87.8 85 51.8
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 1.5e-15 87.8 85 51.8
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 1.5e-15 87.8 128 44.5
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.5e-15 87.8 127 44.9
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 1.5e-15 87.8 128 44.5
MD02G1282000 Malus domestica HOM05D003550 ORTHO05D004336 1.5e-15 87.8 68 57.4
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 1.5e-15 87.8 66 57.6
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.0e-15 87.4 128 44.5
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 2.6e-15 87.0 122 45.1
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.6e-15 87.0 128 44.5
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 2.6e-15 87.0 70 58.6
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 2.6e-15 87.0 70 58.6
CSS0028260 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D111248 3.4e-15 86.7 144 45.1
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 5.8e-15 85.9 86 53.5
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 5.8e-15 85.9 85 50.6
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 5.8e-15 85.9 85 50.6
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 5.8e-15 85.9 85 50.6
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 7.6e-15 85.5 114 43.0
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 7.6e-15 85.5 114 43.0
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 7.6e-15 85.5 62 62.9
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 9.9e-15 85.1 66 57.6
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 1.7e-14 84.3 68 60.3
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 2.2e-14 84.0 115 45.2
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 2.2e-14 84.0 115 45.2
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 2.2e-14 84.0 115 42.6
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 2.2e-14 84.0 115 42.6
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 2.2e-14 84.0 85 49.4
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 2.2e-14 84.0 63 60.3
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 2.9e-14 83.6 116 46.6
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 2.9e-14 83.6 83 48.2
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 4.9e-14 82.8 63 57.1
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 4.9e-14 82.8 107 42.1
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 4.9e-14 82.8 66 53.0
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 6.4e-14 82.4 79 59.5
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 6.4e-14 82.4 83 51.8
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 1.1e-13 81.6 69 55.1
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 1.1e-13 81.6 69 55.1
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 1.4e-13 81.3 63 54.0
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.4e-13 81.3 71 50.7
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 2.4e-13 80.5 104 47.1
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 3.2e-13 80.1 82 47.6
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 7.1e-13 79.0 60 58.3
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 1.6e-12 77.8 63 57.1
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.7e-12 77.0 70 48.6
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.7e-12 77.0 70 48.6
HanXRQChr15g0481051 Helianthus annuus HOM05D003550 ORTHO05D004336 3.5e-12 76.6 117 39.3
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 3.5e-12 76.6 110 41.8
SHI04015 Sapria himalayana HOM05D003550 ORTHO05D000023 4.6e-12 76.3 113 40.7
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 4.6e-12 76.3 66 51.5
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 6.0e-12 75.9 66 51.5
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 1.3e-11 74.7 104 41.3
Lj9A657G27 Lonicera japonica HOM05D003550 ORTHO05D004336 6.7e-11 72.4 46 67.4
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 8.7e-11 72.0 65 50.8
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 1.1e-10 71.6 81 43.2
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 2.5e-10 70.5 109 39.4
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 3.3e-10 70.1 63 52.4
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 4.3e-10 69.7 117 35.9
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 5.6e-10 69.3 117 35.9
ATR0782G192 Amborella trichopoda HOM05D003550 ORTHO05D004336 4.8e-09 66.2 110 37.3
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 4.8e-09 66.2 46 65.2
Os05g0392050 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 8.1e-09 65.5 76 40.8
SMO271G0056 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 8.1e-09 65.5 64 46.9
ATR0719G001 Amborella trichopoda HOM05D003550 ORTHO05D004336 4.0e-08 63.2 64 45.3
ATR0721G162 Amborella trichopoda HOM05D003550 ORTHO05D004336 1.2e-07 61.6 74 40.5
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 1.5e-07 61.2 59 55.9
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 2.6e-07 60.5 120 33.3
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 3.4e-07 60.1 58 53.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 4.5e-07 59.7 66 40.9
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 7.6e-07 58.9 58 53.4
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 6.4e-06 55.8 58 48.3
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 6.4e-06 55.8 58 48.3


User provided reference genes

Program Settings