Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 3.2e-122 441.8 231 100.0
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.1e-121 439.1 231 99.1
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 5.5e-98 361.3 233 81.5
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 2.1e-97 359.4 217 85.7
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.8e-96 356.3 231 81.4
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.0e-96 355.1 231 81.0
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 8.5e-91 337.4 231 77.5
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 9.4e-90 334.0 232 75.4
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 2.7e-89 332.4 231 76.2
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 3.6e-89 332.0 230 77.0
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 8.0e-89 330.9 226 77.0
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 8.0e-89 330.9 235 75.3
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.8e-88 329.7 230 74.3
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.2e-87 327.0 231 74.0
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.5e-87 326.6 251 68.9
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 2.6e-87 325.9 231 71.9
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-86 323.2 251 68.1
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 2.8e-86 322.4 250 68.8
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.8e-86 322.4 251 67.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 2.8e-86 322.4 231 73.6
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 4.8e-86 321.6 235 74.0
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 8.3e-86 320.9 230 72.6
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.1e-85 320.5 251 67.7
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 2.4e-85 319.3 234 74.4
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 3.1e-85 318.9 215 79.5
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 3.1e-85 318.9 248 68.5
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 4.1e-85 318.5 235 74.0
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.4e-85 318.2 234 73.9
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.0e-84 316.2 222 74.8
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.0e-84 316.2 236 73.7
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 3.5e-84 315.5 252 67.9
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 4.5e-84 315.1 235 73.2
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 7.7e-84 314.3 234 73.1
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 1.0e-83 313.9 233 70.8
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.3e-83 313.5 234 72.6
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.7e-83 313.2 232 72.8
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.7e-83 313.2 225 75.1
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-83 312.8 234 72.6
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-83 312.8 234 72.2
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 3.8e-83 312.0 251 66.5
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 6.5e-83 311.2 227 71.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 8.6e-83 310.8 231 71.4
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.5e-82 310.1 233 71.7
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.5e-82 310.1 232 72.0
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.8e-81 305.8 231 71.4
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 2.3e-80 302.8 231 70.1
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-80 302.8 226 72.1
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 3.0e-80 302.4 229 67.2
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 5.2e-80 301.6 234 68.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.2e-80 301.6 236 68.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.2e-80 301.6 236 68.6
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.2e-79 300.4 226 70.8
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 2.6e-79 299.3 234 69.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 2.6e-79 299.3 227 70.0
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 3.4e-79 298.9 238 67.6
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 4.4e-79 298.5 235 69.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.7e-78 296.6 234 68.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 2.4e-77 292.7 226 69.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 5.4e-77 291.6 232 65.5
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 4.5e-76 288.5 236 68.2
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 5.9e-76 288.1 201 76.1
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 7.8e-76 287.7 227 68.7
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 7.8e-76 287.7 227 67.4
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 5.0e-75 285.0 232 64.2
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 6.6e-75 284.6 235 67.2
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 6.6e-75 284.6 235 67.7
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 1.1e-74 283.9 226 68.1
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 9.5e-74 280.8 198 75.8
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 6.1e-73 278.1 239 63.6
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.0e-72 277.3 241 64.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.0e-72 277.3 224 67.0
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 3.0e-72 275.8 230 65.7
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 4.0e-72 275.4 200 70.0
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 5.2e-72 275.0 223 66.8
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 1.2e-71 273.9 235 66.0
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.5e-71 273.5 235 63.8
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.0e-71 273.1 235 63.8
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 9.8e-71 270.8 245 62.4
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.7e-70 270.0 235 65.1
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 4.9e-70 268.5 247 61.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 4.9e-70 268.5 215 67.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.1e-69 267.3 198 71.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 7.0e-69 264.6 260 58.1
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.2e-68 263.8 261 58.2
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.7e-68 262.7 216 69.4
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 2.5e-66 256.1 253 59.3
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.1e-64 249.2 207 65.7
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 5.2e-64 248.4 202 66.8
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.2e-64 248.4 204 65.7
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.8e-64 248.1 178 72.5
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 3.4e-63 245.7 181 71.3
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.8e-63 245.0 228 63.2
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 3.5e-60 235.7 203 62.6
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.1e-56 224.2 195 60.5
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.4e-55 219.2 160 71.9
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 7.1e-53 211.5 230 50.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 8.1e-49 198.0 160 65.0
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 5.8e-47 191.8 231 51.5
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 8.4e-46 188.0 237 48.1
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.4e-45 187.2 223 53.4
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 1.3e-43 180.6 194 55.2
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 5.1e-43 178.7 208 49.5
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.1e-41 173.3 220 50.5
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.2e-38 163.3 157 55.4
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 1.1e-37 161.0 185 49.7
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 1.2e-36 157.5 155 55.5
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 5.6e-34 148.7 112 68.8
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 4.0e-32 142.5 95 75.8
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 9.0e-32 141.4 155 49.7
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 8.7e-27 124.8 110 57.3
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.4e-24 116.7 107 57.0
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 4.0e-24 115.9 151 48.3
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.7e-22 110.5 157 43.9
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 3.3e-18 96.3 116 43.1
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 4.9e-14 82.4 217 30.4
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.2e-12 77.8 61 67.2
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.2e-12 77.8 61 67.2
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.6e-12 77.4 61 63.9
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 3.5e-12 76.3 60 66.7
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.6e-12 75.9 61 65.6
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.6e-09 67.4 58 58.6
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.0e-06 58.2 36 72.2


User provided reference genes

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