Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.9e-128 461.8 222 100.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 3.6e-78 295.4 154 92.9
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 2.3e-77 292.7 194 76.8
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 6.7e-77 291.2 154 89.6
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.5e-76 290.0 154 91.6
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 3.3e-76 288.9 154 89.6
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 7.5e-76 287.7 154 90.9
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.3e-75 287.0 154 90.3
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.3e-75 287.0 154 90.3
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.3e-75 287.0 154 90.3
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.8e-75 285.8 154 89.6
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.4e-74 283.5 154 89.6
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.4e-74 283.5 154 89.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.4e-74 283.5 154 89.6
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 3.1e-74 282.3 154 89.0
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 1.2e-73 280.4 154 89.0
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 2.0e-73 279.6 154 87.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 3.5e-73 278.9 154 87.7
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 4.5e-73 278.5 216 66.2
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.5e-73 278.5 154 85.7
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 2.2e-72 276.2 154 85.7
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 6.5e-72 274.6 154 87.7
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 8.5e-72 274.2 155 87.7
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 8.5e-72 274.2 148 90.5
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 1.9e-71 273.1 153 86.3
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 2.5e-71 272.7 154 89.6
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 2.5e-71 272.7 154 85.7
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 3.2e-71 272.3 154 86.4
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.2e-71 272.3 154 85.7
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 4.2e-71 271.9 154 83.8
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.2e-71 271.9 154 85.7
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 9.4e-71 270.8 154 84.4
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.4e-71 270.8 154 85.1
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.4e-71 270.8 154 85.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.2e-70 270.4 155 85.2
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.1e-70 269.6 155 83.9
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.7e-70 269.2 155 85.2
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 2.7e-70 269.2 154 85.7
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 3.6e-70 268.9 155 83.9
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 4.7e-70 268.5 154 85.1
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 6.1e-70 268.1 154 84.4
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 6.1e-70 268.1 155 83.2
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 6.1e-70 268.1 155 83.9
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 6.1e-70 268.1 154 85.1
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 3.0e-69 265.8 154 81.2
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 3.0e-69 265.8 159 83.6
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 3.0e-69 265.8 154 82.5
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.0e-69 265.8 154 85.1
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 3.0e-69 265.8 154 82.5
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 4.0e-69 265.4 154 83.1
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 8.8e-69 264.2 154 82.5
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 1.2e-68 263.8 155 83.2
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 2.0e-68 263.1 153 81.7
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 2.6e-68 262.7 155 83.2
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 3.4e-68 262.3 154 83.8
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 3.4e-68 262.3 155 82.6
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.4e-68 261.9 154 83.1
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.7e-68 261.5 155 83.2
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 5.7e-68 261.5 154 79.9
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 7.5e-68 261.2 154 81.8
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 9.8e-68 260.8 155 83.2
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 9.8e-68 260.8 155 81.9
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.7e-67 260.0 155 79.4
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 1.7e-67 260.0 155 80.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.7e-67 260.0 155 80.6
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 2.2e-67 259.6 154 81.2
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.8e-67 259.2 154 81.8
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.7e-67 258.8 155 79.4
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 4.8e-67 258.5 154 81.2
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 4.8e-67 258.5 154 81.2
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 4.8e-67 258.5 154 81.2
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 4.8e-67 258.5 154 81.2
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 6.3e-67 258.1 157 80.3
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 8.3e-67 257.7 154 81.8
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 8.3e-67 257.7 154 81.2
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.1e-66 257.3 154 80.5
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.1e-66 257.3 154 80.5
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.1e-66 257.3 159 80.5
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 1.1e-66 257.3 157 80.3
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.4e-66 256.9 154 79.2
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 4.1e-66 255.4 154 79.9
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 5.4e-66 255.0 155 79.4
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 9.1e-66 254.2 155 79.4
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 9.1e-66 254.2 154 81.2
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.6e-65 253.4 154 79.9
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 1.6e-65 253.4 154 80.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.0e-65 253.1 154 79.2
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-65 253.1 154 79.9
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-65 253.1 154 79.9
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 2.7e-65 252.7 154 79.9
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.7e-65 252.7 154 80.5
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.5e-65 252.3 154 79.2
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.5e-65 251.9 154 79.2
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 7.7e-65 251.1 154 79.9
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.3e-64 250.4 206 64.6
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-64 250.4 154 79.2
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 1.3e-64 250.4 154 74.7
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 1.7e-64 250.0 155 80.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.2e-64 249.6 155 78.1
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 2.2e-64 249.6 153 79.1
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 3.8e-64 248.8 156 78.2
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 5.0e-64 248.4 154 78.6
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 8.5e-64 247.7 155 76.1
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 4.2e-63 245.4 153 77.1
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 4.2e-63 245.4 154 78.6
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 5.5e-63 245.0 155 75.5
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 5.5e-63 245.0 154 77.9
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 9.5e-63 244.2 152 79.6
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-62 242.7 139 86.3
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 2.7e-62 242.7 153 75.8
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 4.7e-62 241.9 142 82.4
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 6.1e-62 241.5 156 73.1
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 1.0e-61 240.7 142 81.7
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 1.8e-61 240.0 153 74.5
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 5.2e-61 238.4 154 76.0
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 1.5e-60 236.9 150 74.7
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 3.4e-60 235.7 156 74.4
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.7e-60 235.0 154 74.0
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 5.7e-60 235.0 154 74.0
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.3e-59 233.8 153 73.9
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.3e-59 233.8 154 73.4
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 1.7e-59 233.4 149 73.8
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.7e-59 232.3 139 83.5
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 4.9e-59 231.9 154 73.4
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 8.3e-59 231.1 144 77.1
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.1e-58 229.2 154 70.8
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.0e-58 228.0 154 70.1
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.0e-58 228.0 154 70.1
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 2.7e-57 226.1 154 69.5
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 5.0e-56 221.9 145 76.6
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 1.5e-55 220.3 137 77.4
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 7.3e-55 218.0 138 78.3
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 1.6e-54 216.9 151 67.5
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 8.0e-54 214.5 152 67.1
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.3e-51 207.2 154 65.6
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 1.7e-51 206.8 154 65.6
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 5.2e-45 185.3 101 87.1
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 5.2e-45 185.3 101 87.1
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 4.1e-42 175.6 101 83.2
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.2e-41 174.1 101 83.2
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 1.0e-40 171.0 102 81.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.6e-40 168.3 104 79.8
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 2.5e-39 166.4 119 68.9
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 3.6e-38 162.5 169 47.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.2e-38 161.8 98 77.6
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.9e-37 157.9 101 75.2
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.2e-36 157.5 101 76.2
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.5e-36 157.1 98 77.6
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.6e-33 147.1 152 50.0
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 7.3e-31 138.3 95 74.7
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 3.9e-24 115.9 60 85.0
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.2e-20 104.4 94 58.5
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.2e-20 104.4 149 38.9
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.0e-20 103.6 54 90.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 8.4e-19 98.2 120 45.0
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 1.9e-18 97.1 52 90.4
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.2e-18 95.9 98 56.1
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.1e-17 93.6 104 45.2
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 5.1e-16 89.0 48 87.5
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 1.5e-15 87.4 142 38.0
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.9e-15 87.0 50 84.0
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 3.8e-11 72.8 74 51.4
RcHm_v2.0_Chr5g0055661 Rosa chinensis HOM05D004471 ORTHO05D005345 9.6e-07 58.2 35 74.3


User provided reference genes

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