Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028111 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 4.5e-32 140.6 68 100.0
Dinv07505 Davidia involucrata HOM05D002740 ORTHO05D003126 1.0e-20 102.8 66 77.3
Actinidia06833 Actinidia chinensis HOM05D002740 ORTHO05D003126 5.7e-19 97.1 54 83.3
Aqoxy5G00131 Aquilegia oxysepala HOM05D002740 ORTHO05D003126 5.7e-19 97.1 63 73.0
Hma1.2p1_0130F.1_g060480 Hydrangea macrophylla HOM05D002740 ORTHO05D003126 1.3e-18 95.9 54 83.3
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.3e-18 95.9 63 71.4
CSS0008679 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 2.8e-18 94.7 60 75.0
Nn1g02994 Nelumbo nucifera HOM05D002740 ORTHO05D003126 3.7e-18 94.4 63 68.3
GSVIVG01001480001 Vitis vinifera HOM05D002740 ORTHO05D003126 3.7e-18 94.4 54 79.6
Lj2A46T69 Lonicera japonica HOM05D002740 ORTHO05D003126 4.8e-18 94.0 61 72.1
Lj8A197T37 Lonicera japonica HOM05D002740 ORTHO05D003126 4.8e-18 94.0 54 77.8
TWI32G1314 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 4.8e-18 94.0 65 67.7
TAR365G1151 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.8e-18 94.0 63 69.8
Ciclev10030905m.g Citrus clementina HOM05D002740 ORTHO05D003126 6.3e-18 93.6 54 75.9
TAR365G0402 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.8e-17 92.0 63 68.3
QL03p029148 Quercus lobata HOM05D002740 ORTHO05D003126 2.4e-17 91.7 60 70.0
COL.COLO4_15534 Corchorus olitorius HOM05D002740 ORTHO05D003126 3.1e-17 91.3 54 72.2
Haze_04394 Corylus avellana HOM05D002740 ORTHO05D003126 3.1e-17 91.3 63 66.7
Duzib128G1958 Durio zibethinus HOM05D002740 ORTHO05D003126 3.1e-17 91.3 54 74.1
Lsat_1_v5_gn_8_2520 Lactuca sativa HOM05D002740 ORTHO05D003126 3.1e-17 91.3 63 66.7
Atru.chr2.1110 Acer truncatum HOM05D002740 ORTHO05D003126 4.1e-17 90.9 54 72.2
Sc09g0001850 Simmondsia chinensis HOM05D002740 ORTHO05D003126 7.0e-17 90.1 53 75.5
MD04G1232700 Malus domestica HOM05D002740 ORTHO05D003126 9.1e-17 89.7 63 66.7
Nitab4.5_0000476g0220 Nicotiana tabacum HOM05D002740 ORTHO05D003126 9.1e-17 89.7 52 80.8
Nn3g19799 Nelumbo nucifera HOM05D002740 ORTHO05D003126 1.2e-16 89.4 63 63.5
Nitab4.5_0010891g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.0e-16 88.6 52 78.8
MSTRG.8171 Avicennia marina HOM05D002740 ORTHO05D003126 2.7e-16 88.2 54 75.9
MD12G1250300 Malus domestica HOM05D002740 ORTHO05D003126 2.7e-16 88.2 63 66.7
TWI60G0984 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 2.7e-16 88.2 67 59.7
TAR633G0934 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.7e-16 88.2 68 63.2
DCAR_005516 Daucus carota HOM05D002740 ORTHO05D003126 3.5e-16 87.8 64 68.8
Prupe.6G352500 Prunus persica HOM05D002740 ORTHO05D003126 3.5e-16 87.8 63 66.7
CANSAT54G3003 Cannabis sativa HOM05D002740 ORTHO05D003126 1.0e-15 86.3 53 69.8
Thecc.05G266800 Theobroma cacao HOM05D002740 ORTHO05D003126 1.0e-15 86.3 54 66.7
arahy.Tifrunner.gnm1.ann1.33UQPP Arachis hypogaea HOM05D002740 ORTHO05D003126 1.3e-15 85.9 61 62.3
arahy.Tifrunner.gnm1.ann1.JB472D Arachis hypogaea HOM05D002740 ORTHO05D003126 1.3e-15 85.9 61 62.3
Gohir.D08G234800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 1.3e-15 85.9 54 68.5
Gorai.004G249600 Gossypium raimondii HOM05D002740 ORTHO05D003126 1.3e-15 85.9 54 68.5
ATR0787G107 Amborella trichopoda HOM05D002740 ORTHO05D003126 2.2e-15 85.1 54 66.7
TPR.G26625 Trifolium pratense HOM05D002740 ORTHO05D003126 2.9e-15 84.7 63 60.3
CiPaw.07G070800 Carya illinoinensis HOM05D002740 ORTHO05D003126 3.8e-15 84.3 53 67.9
Lj5g0022875 Lotus japonicus HOM05D002740 ORTHO05D003126 3.8e-15 84.3 64 64.1
Manes.08G140900 Manihot esculenta HOM05D002740 ORTHO05D003126 3.8e-15 84.3 61 62.3
Manes.08G141500 Manihot esculenta HOM05D002740 ORTHO05D003126 3.8e-15 84.3 61 62.3
PSO764G0261 Papaver somniferum HOM05D002740 ORTHO05D003126 3.8e-15 84.3 54 68.5
Medtr1g080470 Medicago truncatula HOM05D002740 ORTHO05D003126 5.0e-15 84.0 63 58.7
Glyma.10G164300 Glycine max HOM05D002740 ORTHO05D003126 1.1e-14 82.8 53 67.9
Lalb_Chr02g0148991 Lupinus albus HOM05D002740 ORTHO05D003126 1.1e-14 82.8 53 66.0
Nitab4.5_0000841g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-14 82.8 53 73.6
Nitab4.5_0002088g0010 Nicotiana tabacum HOM05D002740 ORTHO05D003126 1.1e-14 82.8 53 73.6
Duzib177G0935 Durio zibethinus HOM05D002740 ORTHO05D003126 1.5e-14 82.4 54 68.5
Gohir.D11G254700 Gossypium hirsutum HOM05D002740 ORTHO05D003126 1.5e-14 82.4 62 59.7
Gorai.007G273300 Gossypium raimondii HOM05D002740 ORTHO05D003126 1.5e-14 82.4 62 59.7
Peaxi162Scf00156g00620 Petunia axillaris HOM05D002740 ORTHO05D003126 1.5e-14 82.4 52 71.2
Phvul.008G137801 Phaseolus vulgaris HOM05D002740 ORTHO05D003126 1.5e-14 82.4 53 66.0
SGA_v2.0_scaffold62G21468 Striga asiatica HOM05D002740 ORTHO05D003126 1.5e-14 82.4 54 70.4
VMungo0720G1032 Vigna mungo HOM05D002740 ORTHO05D003126 1.5e-14 82.4 53 66.0
Gohir.A11G244600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 1.9e-14 82.0 62 59.7
PSO832G0576 Papaver somniferum HOM05D002740 ORTHO05D003126 1.9e-14 82.0 54 66.7
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 1.9e-14 82.0 54 68.5
CAN.G94.6 Capsicum annuum HOM05D002740 ORTHO05D003126 2.5e-14 81.6 53 73.6
Migut.F02056 Erythranthe guttata HOM05D002740 ORTHO05D003126 2.5e-14 81.6 54 72.2
HanXRQChr11g0327251 Helianthus annuus HOM05D002740 ORTHO05D003126 2.5e-14 81.6 63 63.5
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 2.5e-14 81.6 62 62.9
Glyma.20G226700 Glycine max HOM05D002740 ORTHO05D003126 3.2e-14 81.3 53 67.9
Psat6g144200 Pisum sativum HOM05D002740 ORTHO05D003126 3.2e-14 81.3 63 58.7
FAN05G0538 Fragaria x ananassa HOM05D002740 ORTHO05D003126 4.2e-14 80.9 63 60.3
FAN05G2066 Fragaria x ananassa HOM05D002740 ORTHO05D003126 4.2e-14 80.9 63 60.3
Manes.09G146900 Manihot esculenta HOM05D002740 ORTHO05D003126 4.2e-14 80.9 61 59.0
RcHm_v2.0_Chr3g0449211 Rosa chinensis HOM05D002740 ORTHO05D003126 4.2e-14 80.9 61 62.3
Sopen04g020910 Solanum pennellii HOM05D002740 ORTHO05D003126 4.2e-14 80.9 52 73.1
TAR362G1135 Trochodendron aralioides HOM05D002740 ORTHO05D003126 4.2e-14 80.9 59 64.4
Lsat_1_v5_gn_2_16740 Lactuca sativa HOM05D002740 ORTHO05D003126 5.5e-14 80.5 63 61.9
Oeu010185.1 Olea europaea HOM05D002740 ORTHO05D003126 5.5e-14 80.5 54 66.7
Solyc04g050190.4 Solanum lycopersicum HOM05D002740 ORTHO05D003126 5.5e-14 80.5 52 71.2
THA.LOC104823789 Tarenaya hassleriana HOM05D002740 ORTHO05D003126 5.5e-14 80.5 54 61.1
vmacro02711 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 5.5e-14 80.5 57 61.4
Ca_10029_v3 Cicer arietinum L. HOM05D002740 ORTHO05D003126 7.2e-14 80.1 63 58.7
Cc09_g02980 Coffea canephora HOM05D002740 ORTHO05D003126 7.2e-14 80.1 53 69.8
Cpa.g.sc51.3 Carica papaya HOM05D002740 ORTHO05D003126 9.4e-14 79.7 62 58.1
MBI16_g02733_MAGBIO Magnolia biondii HOM05D002740 ORTHO05D003126 9.4e-14 79.7 58 65.5
Potri.019G022700 Populus trichocarpa HOM05D002740 ORTHO05D003126 1.2e-13 79.3 54 61.1
Aa31LG2G2010 Aethionema arabicum HOM05D002740 ORTHO05D003126 1.6e-13 79.0 54 64.8
FvH4_6g01520 Fragaria vesca HOM05D002740 ORTHO05D003126 1.6e-13 79.0 61 60.7
FAN14G2846 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.6e-13 79.0 61 60.7
FAN14G4679 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.6e-13 79.0 61 60.7
Hund07176 Selenicereus undatus HOM05D002740 ORTHO05D003126 1.6e-13 79.0 62 58.1
Eucgr.H04213 Eucalyptus grandis HOM05D002740 ORTHO05D003126 2.1e-13 78.6 63 58.7
RcHm_v2.0_Chr6g0286581 Rosa chinensis HOM05D002740 ORTHO05D003126 2.1e-13 78.6 53 66.0
GSVIVG01028433001 Vitis vinifera HOM05D002740 ORTHO05D003126 2.1e-13 78.6 54 63.0
Carub.0007s3054 Capsella rubella HOM05D002740 ORTHO05D003126 2.7e-13 78.2 54 61.1
Dinv19266 Davidia involucrata HOM05D002740 ORTHO05D003126 2.7e-13 78.2 56 60.7
FAN09G1477 Fragaria x ananassa HOM05D002740 ORTHO05D003126 2.7e-13 78.2 61 60.7
Actinidia37554 Actinidia chinensis HOM05D002740 ORTHO05D003126 3.6e-13 77.8 60 63.3
CDE02G1172 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 3.6e-13 77.8 54 66.7
CDE08G1574 Ceratophyllum demersum HOM05D002740 ORTHO05D003126 3.6e-13 77.8 54 64.8
HanXRQChr14g0431491 Helianthus annuus HOM05D002740 ORTHO05D003126 3.6e-13 77.8 60 63.3
Sabra13G0045500 Salix brachista HOM05D002740 ORTHO05D003126 3.6e-13 77.8 54 57.4
ECA238G0995 Erigeron canadensis HOM05D002740 ORTHO05D003126 4.7e-13 77.4 54 66.7
EL10Ac4g09762 Beta vulgaris HOM05D002740 ORTHO05D003126 6.1e-13 77.0 53 64.2
Oeu052082.1 Olea europaea HOM05D002740 ORTHO05D003126 6.1e-13 77.0 58 60.3
Solyc09g064510.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 6.1e-13 77.0 53 64.2
Nitab4.5_0000845g0210 Nicotiana tabacum HOM05D002740 ORTHO05D003126 8.0e-13 76.6 53 64.2
unitig_88.g27818 Utricularia gibba HOM05D002740 ORTHO05D003126 8.0e-13 76.6 54 68.5
Ciclev10023610m.g Citrus clementina HOM05D002740 ORTHO05D003126 1.4e-12 75.9 53 64.2
CAN.G536.13 Capsicum annuum HOM05D002740 ORTHO05D003126 1.8e-12 75.5 53 66.0
CARHR217090 Cardamine hirsuta HOM05D002740 ORTHO05D003126 1.8e-12 75.5 54 61.1
Cfa002487 Carpinus fangiana HOM05D002740 ORTHO05D003126 1.8e-12 75.5 54 63.0
HanXRQChr14g0443151 Helianthus annuus HOM05D002740 ORTHO05D003126 1.8e-12 75.5 62 58.1
CsaV3_1G045030 Cucumis sativus L. HOM05D002740 ORTHO05D003126 2.3e-12 75.1 52 63.5
Nitab4.5_0002435g0030 Nicotiana tabacum HOM05D002740 ORTHO05D003126 2.3e-12 75.1 53 62.3
PGSC0003DMG400008580 Solanum tuberosum HOM05D002740 ORTHO05D003126 2.3e-12 75.1 53 64.2
vmacro19980 Vaccinium macrocarpon HOM05D002740 ORTHO05D003126 2.3e-12 75.1 44 81.8
Sopen09g025670 Solanum pennellii HOM05D002740 ORTHO05D003126 3.0e-12 74.7 53 62.3
AT5G32470 Arabidopsis thaliana HOM05D002740 ORTHO05D003126 4.0e-12 74.3 54 57.4
CiPaw.03G271200 Carya illinoinensis HOM05D002740 ORTHO05D003126 4.0e-12 74.3 52 61.5
ClCG03G011470 Citrullus lanatus HOM05D002740 ORTHO05D003126 4.0e-12 74.3 52 63.5
MELO3C010087.2 Cucumis melo HOM05D002740 ORTHO05D003126 4.0e-12 74.3 52 63.5
Thhalv10002337m.g Eutrema salsugineum HOM05D002740 ORTHO05D003126 4.0e-12 74.3 60 55.0
BcaC07g37707 Brassica carinata HOM05D002740 ORTHO05D003126 5.2e-12 73.9 54 59.3
A08p10090 Brassica napus HOM05D002740 ORTHO05D003126 5.2e-12 73.9 54 59.3
BolC8t48073H Brassica oleracea HOM05D002740 ORTHO05D003126 5.2e-12 73.9 54 59.3
BraA08t33006Z Brassica rapa HOM05D002740 ORTHO05D003126 5.2e-12 73.9 54 59.3
CSS0008677 Camellia sinensis var. sinensis HOM05D002740 ORTHO05D003126 5.2e-12 73.9 53 64.2
Potri.013G049300 Populus trichocarpa HOM05D002740 ORTHO05D003126 5.2e-12 73.9 54 53.7
HPP92_025821 Vanilla planifolia HOM05D002740 ORTHO05D003126 5.2e-12 73.9 65 55.4
Ah.06g187970 Amaranthus hybridus HOM05D002740 ORTHO05D003126 6.8e-12 73.6 53 60.4
Psat7g152280 Pisum sativum HOM05D002740 ORTHO05D003126 6.8e-12 73.6 50 64.0
Sp7g07700 Schrenkiella parvula HOM05D002740 ORTHO05D003126 6.8e-12 73.6 60 55.0
Aa31LG9G18030 Aethionema arabicum HOM05D002740 ORTHO05D003126 8.8e-12 73.2 54 61.1
AL7G43640 Arabidopsis lyrata HOM05D002740 ORTHO05D003126 8.8e-12 73.2 54 55.6
AUR62006985 Chenopodium quinoa HOM05D002740 ORTHO05D003126 8.8e-12 73.2 53 60.4
Peaxi162Scf00043g00272 Petunia axillaris HOM05D002740 ORTHO05D003126 8.8e-12 73.2 53 62.3
BcaB04g18093 Brassica carinata HOM05D002740 ORTHO05D003126 1.2e-11 72.8 61 52.5
AUR62000632 Chenopodium quinoa HOM05D002740 ORTHO05D003126 1.2e-11 72.8 53 60.4
Peaxi162Scf00077g00094 Petunia axillaris HOM05D002740 ORTHO05D003126 1.2e-11 72.8 53 71.7
Duzib106G0100 Durio zibethinus HOM05D002740 ORTHO05D003126 2.6e-11 71.6 53 62.3
SalBow1G0650 Salvia bowleyana HOM05D002740 ORTHO05D003126 2.6e-11 71.6 54 59.3
Manes.13G039600 Manihot esculenta HOM05D002740 ORTHO05D003126 3.4e-11 71.2 54 63.0
Lj1A74G101 Lonicera japonica HOM05D002740 ORTHO05D003126 4.4e-11 70.9 64 54.7
COL.COLO4_10203 Corchorus olitorius HOM05D002740 ORTHO05D003126 7.5e-11 70.1 53 58.5
Dinv11352 Davidia involucrata HOM05D002740 ORTHO05D035063 9.8e-11 69.7 56 55.4
FvH4_2g20480 Fragaria vesca HOM05D002740 ORTHO05D003126 9.8e-11 69.7 53 58.5
FAN24G0357 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.8e-11 69.7 53 58.5
FAN27G2178 Fragaria x ananassa HOM05D002740 ORTHO05D003126 9.8e-11 69.7 53 58.5
FAN15G0236 Fragaria x ananassa HOM05D002740 ORTHO05D003126 1.7e-10 68.9 53 58.5
Cpa.g.sc87.32 Carica papaya HOM05D002740 ORTHO05D003126 2.2e-10 68.6 63 52.4
HPP92_022080 Vanilla planifolia HOM05D002740 ORTHO05D003126 2.2e-10 68.6 51 56.9
Ah.02g118370 Amaranthus hybridus HOM05D002740 ORTHO05D003126 2.8e-10 68.2 51 60.8
Sc16g0009790 Simmondsia chinensis HOM05D002740 ORTHO05D003126 2.8e-10 68.2 52 59.6
Thecc.01G249900 Theobroma cacao HOM05D002740 ORTHO05D003126 4.8e-10 67.4 53 54.7
Zm00001eb175630 Zea mays HOM05D002740 ORTHO05D003126 8.3e-10 66.6 62 58.1
MSTRG.12516 Avicennia marina HOM05D002740 ORTHO05D003126 1.1e-09 66.2 58 56.9
SHI23920 Sapria himalayana HOM05D002740 ORTHO05D003126 1.1e-09 66.2 54 53.7
Duzib133G0998 Durio zibethinus HOM05D002740 ORTHO05D003126 1.8e-09 65.5 53 54.7
QL09p041531 Quercus lobata HOM05D002740 ORTHO05D003126 1.8e-09 65.5 53 54.7
Os08g0566000 Oryza sativa ssp. japonica HOM05D002740 ORTHO05D003126 3.1e-09 64.7 64 59.4
Gohir.D07G158800 Gossypium hirsutum HOM05D002740 ORTHO05D003126 4.1e-09 64.3 53 52.8
Gorai.001G182000 Gossypium raimondii HOM05D002740 ORTHO05D003126 4.1e-09 64.3 53 52.8
Solyc05g055900.3 Solanum lycopersicum HOM05D002740 ORTHO05D003126 4.1e-09 64.3 52 61.5
Gohir.A07G152600 Gossypium hirsutum HOM05D002740 ORTHO05D003126 5.4e-09 63.9 53 50.9
Prupe.8G215100 Prunus persica HOM05D002740 ORTHO05D003126 7.0e-09 63.5 56 57.1
TWI75G0335 Tripterygium wilfordii HOM05D002740 ORTHO05D003126 7.0e-09 63.5 53 54.7
Zm00001eb038600 Zea mays HOM05D002740 ORTHO05D003126 7.0e-09 63.5 63 55.6
SMO203G0094 Selaginella moellendorffii HOM05D002740 ORTHO05D003126 2.7e-08 61.6 52 51.9
MD05G1188600 Malus domestica HOM05D002740 ORTHO05D003126 3.5e-08 61.2 56 60.7
Pp3c12_23680 Physcomitrium patens HOM05D002740 ORTHO05D003126 3.5e-08 61.2 53 52.8
Eucgr.A01666 Eucalyptus grandis HOM05D002740 ORTHO05D003126 4.5e-08 60.8 52 53.8
Mapoly0061s0052 Marchantia polymorpha HOM05D002740 ORTHO05D003126 7.7e-08 60.1 52 55.8
Migut.N02233 Erythranthe guttata HOM05D002740 ORTHO05D003126 2.9e-07 58.2 52 51.9
Lsat_1_v5_gn_9_11541 Lactuca sativa HOM05D002740 ORTHO05D003126 6.6e-07 57.0 53 47.2
Sed0005304 Sechium edule HOM05D002740 ORTHO05D003126 6.6e-07 57.0 52 48.1
AagrBONN_evm.TU.Sc2ySwM_228.5261 Anthoceros agrestis HOM05D002740 ORTHO05D003126 8.6e-07 56.6 57 47.4
AagrBONN_evm.TU.Sc2ySwM_228.5264 Anthoceros agrestis HOM05D002740 ORTHO05D003126 8.6e-07 56.6 57 47.4
Sc16g0010200 Simmondsia chinensis HOM05D002740 ORTHO05D003126 1.1e-06 56.2 64 45.3
EL10Ac2g03423 Beta vulgaris HOM05D002740 ORTHO05D003126 1.5e-06 55.8 54 42.6
Haze_24709 Corylus avellana HOM05D002740 ORTHO05D003126 4.2e-06 54.3 39 59.0
HanXRQChr10g0280201 Helianthus annuus HOM05D002740 ORTHO05D003126 4.2e-06 54.3 53 50.9
Cre08.g365600 Chlamydomonas reinhardtii HOM05D005536 ORTHO05D006999 5.5e-06 53.9 54 42.6
Sc22g0004630 Simmondsia chinensis HOM05D002740 ORTHO05D003126 7.2e-06 53.5 58 44.8
Haze_05820 Corylus avellana HOM05D002740 ORTHO05D000539 9.5e-06 53.1 45 53.3
Sopen05g034300 Solanum pennellii HOM05D002740 ORTHO05D003126 9.5e-06 53.1 40 65.0


User provided reference genes

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