Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 4.8e-180 634.4 330 100.0
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 1.7e-177 625.9 330 99.1
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 4.7e-127 458.4 329 76.3
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 8.9e-126 454.1 315 77.8
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 2.1e-111 406.4 332 69.9
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 6.4e-108 394.8 297 70.7
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.4e-107 392.9 331 66.5
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.3e-105 387.1 304 68.4
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 2.5e-104 382.9 309 66.7
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 5.6e-104 381.7 344 62.8
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 8.1e-103 377.9 311 64.3
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.0e-102 375.6 266 71.8
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 7.6e-101 371.3 284 66.5
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.0e-100 370.9 311 65.0
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 1.7e-100 370.2 304 65.1
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.7e-100 370.2 298 65.8
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 3.8e-100 369.0 308 64.6
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.8e-100 369.0 335 61.2
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 8.4e-100 367.9 294 63.9
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.4e-99 367.1 320 61.2
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.5e-99 366.3 298 65.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 5.5e-99 365.2 299 64.2
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 5.5e-99 365.2 333 59.5
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 2.1e-98 363.2 306 63.1
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.1e-98 363.2 333 59.8
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.1e-98 363.2 304 63.8
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.5e-98 362.5 306 62.7
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 4.6e-98 362.1 304 63.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 7.9e-98 361.3 307 64.5
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 3.9e-97 359.0 306 62.4
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.5e-96 357.1 265 67.5
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 2.5e-96 356.3 294 62.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 4.3e-96 355.5 293 63.1
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.3e-95 354.0 311 59.5
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.3e-95 354.0 303 62.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.8e-95 352.8 280 64.3
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 4.8e-95 352.1 311 60.1
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 8.2e-95 351.3 294 62.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 5.3e-94 348.6 263 65.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 6.9e-94 348.2 297 60.9
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 1.2e-93 347.4 301 60.8
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 7.6e-93 344.7 314 60.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 5.0e-92 342.0 265 65.7
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 7.1e-91 338.2 297 60.3
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 7.1e-91 338.2 282 62.8
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 9.3e-91 337.8 343 57.1
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.7e-90 336.3 272 61.4
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 4.6e-90 335.5 338 55.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 1.8e-89 333.6 263 66.2
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.8e-89 333.6 293 60.4
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.3e-89 333.2 268 61.9
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 5.1e-89 332.0 262 66.0
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 2.5e-88 329.7 310 58.7
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 2.2e-87 326.6 321 54.5
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.2e-87 326.6 281 59.1
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 3.7e-87 325.9 314 57.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 4.8e-87 325.5 314 56.7
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 8.2e-87 324.7 306 56.5
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 1.4e-86 323.9 271 60.1
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 2.4e-86 323.2 320 55.6
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 3.1e-86 322.8 306 58.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 9.0e-86 321.2 297 59.3
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 2.0e-85 320.1 311 55.6
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.6e-85 319.7 318 56.3
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 4.5e-85 318.9 274 62.4
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 1.7e-84 317.0 272 62.1
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 1.7e-84 317.0 298 58.4
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 3.8e-84 315.8 273 62.6
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 6.5e-84 315.1 317 53.3
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 8.5e-84 314.7 307 57.3
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.1e-83 314.3 272 61.8
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 8.8e-81 304.7 301 55.5
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.0e-80 303.5 295 55.9
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 2.2e-79 300.1 308 53.9
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 4.1e-78 295.8 242 63.6
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 4.1e-78 295.8 312 53.2
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.0e-76 291.2 311 51.8
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.5e-76 288.1 274 58.4
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 5.1e-73 278.9 382 44.5
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 4.4e-72 275.8 288 49.7
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 7.4e-72 275.0 331 48.0
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 8.2e-71 271.6 238 59.7
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.6e-69 266.5 299 48.5
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 2.6e-69 266.5 268 50.7
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 5.9e-69 265.4 268 53.4
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.5e-67 260.8 259 55.2
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 2.5e-67 260.0 288 51.0
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 5.5e-67 258.8 289 51.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 3.3e-64 249.6 161 78.9
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.7e-63 246.1 205 63.4
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.3e-63 245.4 270 51.9
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 7.0e-62 241.9 268 51.5
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 3.5e-61 239.6 204 57.8
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.0e-60 238.0 153 80.4
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 3.6e-58 229.6 157 75.8
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 3.7e-55 219.5 255 46.7
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 4.8e-55 219.2 220 54.5
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 7.7e-53 211.8 276 47.8
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 1.3e-52 211.1 268 42.9
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.9e-52 209.9 205 57.6
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.2e-50 204.5 131 77.1
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 4.7e-50 202.6 268 47.0
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 8.8e-49 198.4 293 38.6
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.7e-47 194.1 185 58.9
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.5e-43 181.0 157 61.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.3e-41 173.7 219 47.0
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.7e-39 167.5 284 37.3
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.1e-38 162.9 105 78.1
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.7e-36 157.5 145 53.8
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 5.6e-35 152.5 182 43.4
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.6e-34 151.0 105 74.3
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 5.8e-32 142.5 174 47.1
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.9e-30 137.5 131 57.3
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 7.0e-30 135.6 139 55.4
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 3.5e-29 133.3 87 72.4
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 8.6e-28 128.6 107 66.4
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 1.6e-26 124.4 82 75.6
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.7e-23 114.4 126 47.6
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 1.5e-19 101.3 117 47.0
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 5.2e-17 92.8 72 66.7
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.2e-15 87.4 107 53.3
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.9e-15 87.0 92 56.5
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-13 81.6 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.8e-10 70.5 149 31.5
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 6.2e-10 69.3 86 45.3
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 5.2e-09 66.2 57 57.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 1.5e-08 64.7 54 61.1
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 3.4e-08 63.5 46 65.2
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 5.8e-08 62.8 271 25.1
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 7.6e-08 62.4 271 24.7
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.3e-07 61.6 68 58.8
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 2.2e-07 60.8 90 36.7
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 2.2e-07 60.8 246 24.8
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 3.8e-07 60.1 277 24.5
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 4.9e-07 59.7 68 55.9
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 4.9e-07 59.7 236 24.6
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 6.4e-07 59.3 61 54.1
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 6.4e-07 59.3 246 25.2
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 8.4e-07 58.9 186 26.9
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 1.9e-06 57.8 246 24.8
FvH4_2g10341 Fragaria vesca HOM05D005386 ORTHO05D006981 2.4e-06 57.4 54 50.0
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 3.2e-06 57.0 149 29.5
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.2e-06 57.0 202 25.7
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 4.2e-06 56.6 188 24.5
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 5.4e-06 56.2 196 27.0
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 5.4e-06 56.2 263 22.8
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 7.1e-06 55.8 159 30.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 7.1e-06 55.8 166 29.5
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 7.1e-06 55.8 49 59.2
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 7.1e-06 55.8 218 26.1
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 7.1e-06 55.8 186 26.3
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 9.3e-06 55.5 242 25.2
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 9.3e-06 55.5 161 30.4
Ciclev10029903m.g Citrus clementina HOM05D005386 ORTHO05D006981 9.3e-06 55.5 43 53.5
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 9.3e-06 55.5 247 24.3
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 9.3e-06 55.5 167 26.9


User provided reference genes

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