Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.6e-99 365.2 218 100.0
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.0e-99 364.0 218 97.7
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 5.1e-61 238.4 224 66.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 8.1e-51 204.5 235 60.0
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 4.0e-50 202.2 234 53.4
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.3e-50 201.8 223 56.1
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.0e-50 201.1 231 58.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.0e-48 197.6 225 57.8
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.7e-48 196.8 231 52.8
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 3.8e-48 195.7 237 51.1
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.4e-48 194.5 229 55.5
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 2.5e-47 193.0 248 51.2
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.5e-47 193.0 234 51.7
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 9.3e-47 191.0 234 60.7
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.7e-46 189.5 229 56.8
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 3.5e-46 189.1 230 57.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 7.9e-46 188.0 227 55.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.0e-45 187.6 228 51.8
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.8e-45 186.8 234 54.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.3e-45 186.4 245 53.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-45 186.0 210 61.0
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.1e-45 185.3 241 55.2
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 5.1e-45 185.3 227 56.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.7e-45 184.5 250 53.2
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.1e-44 184.1 249 53.4
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.5e-44 183.7 234 50.4
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.5e-44 183.7 225 52.4
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.9e-44 183.3 231 50.6
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.9e-44 183.3 231 50.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.9e-44 183.3 222 55.9
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.5e-44 183.0 240 50.8
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 2.5e-44 183.0 238 49.6
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 2.5e-44 183.0 238 49.6
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 2.5e-44 183.0 248 53.6
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.5e-44 183.0 250 53.6
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 4.3e-44 182.2 230 50.9
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 9.6e-44 181.0 236 54.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-43 180.6 224 54.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 4.8e-43 178.7 237 48.5
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.3e-43 178.3 236 51.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.4e-42 176.4 234 54.7
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.2e-41 174.1 227 53.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-41 173.7 226 53.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.5e-41 173.7 226 53.1
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.0e-41 173.3 220 54.5
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.0e-41 173.3 167 67.1
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.5e-41 172.2 227 55.1
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.6e-41 171.4 238 52.1
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-40 171.0 230 50.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 1.7e-40 170.2 245 48.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-40 170.2 224 50.0
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.0e-40 168.7 234 50.4
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 6.5e-40 168.3 230 50.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.2e-39 164.9 228 51.3
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.2e-39 164.9 252 50.4
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 9.3e-39 164.5 230 54.8
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 9.3e-39 164.5 228 45.6
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.6e-38 163.7 228 50.0
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.1e-38 163.3 237 48.5
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 4.6e-38 162.2 233 46.8
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.3e-37 160.6 210 44.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.8e-37 160.2 224 47.3
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 1.8e-37 160.2 224 48.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.8e-37 160.2 227 46.3
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-37 159.5 228 50.9
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.9e-37 159.1 227 48.9
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.7e-37 157.9 225 44.9
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-36 156.4 225 48.0
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.5e-36 156.4 248 46.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 3.3e-36 156.0 248 44.8
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 9.7e-36 154.5 241 41.5
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.3e-35 154.1 228 49.6
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.2e-35 153.3 235 43.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-35 152.5 240 40.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-35 152.5 240 40.4
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.3e-35 151.8 241 41.1
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.1e-34 151.0 224 45.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.4e-34 149.8 240 42.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 3.1e-34 149.4 218 47.2
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.1e-34 149.1 233 48.1
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.3e-34 148.7 153 57.5
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.0e-33 146.7 243 43.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.6e-33 146.4 266 41.0
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 5.9e-33 145.2 97 76.3
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.7e-32 143.7 230 40.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.1e-31 141.0 230 39.6
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 7.2e-31 138.3 228 38.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 9.4e-31 137.9 216 46.8
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-30 137.1 218 41.7
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 6.1e-30 135.2 241 41.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.0e-29 132.9 240 41.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 8.8e-29 131.3 230 35.7
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.0e-28 130.2 237 47.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.6e-28 129.8 227 38.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.3e-28 129.4 256 44.5
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.4e-26 124.0 231 37.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 9.1e-26 121.3 219 40.2
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-25 120.6 249 39.4
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.0e-25 120.2 149 49.0
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.3e-24 117.5 222 38.3
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.8e-24 115.9 220 38.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 6.5e-24 115.2 228 36.8
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 8.5e-24 114.8 226 38.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.9e-23 113.6 254 43.3
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.9e-23 113.6 226 34.5
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.2e-22 110.9 227 42.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.1e-22 108.6 226 36.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 7.9e-22 108.2 232 36.2
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.8e-21 107.1 223 39.0
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 2.3e-21 106.7 235 31.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 6.7e-21 105.1 223 38.6
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 6.7e-21 105.1 221 38.0
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 6.7e-21 105.1 220 42.3
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 2.6e-20 103.2 219 38.8
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 2.6e-20 103.2 219 38.8
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 3.3e-20 102.8 223 37.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 3.3e-20 102.8 243 33.3
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 4.4e-20 102.4 215 37.7
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 4.4e-20 102.4 215 37.7
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.8e-19 99.8 217 35.0
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.8e-19 99.0 208 34.6
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.3e-19 98.6 150 44.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 8.2e-19 98.2 129 48.1
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.4e-18 97.4 222 34.7
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.3e-18 95.5 215 36.7
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 5.3e-18 95.5 227 32.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.2e-17 94.4 223 35.9
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.6e-17 94.0 226 29.6
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.0e-17 93.6 217 34.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 2.0e-17 93.6 214 36.4
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 3.5e-17 92.8 225 30.7
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 3.5e-17 92.8 225 30.7
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 5.9e-17 92.0 220 32.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 5.9e-17 92.0 220 32.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 5.9e-17 92.0 220 32.7
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.7e-17 91.7 208 35.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.0e-16 91.3 223 34.1
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 6.5e-16 88.6 145 40.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.1e-15 87.8 248 33.9
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.5e-15 87.4 135 42.2
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.5e-15 85.5 121 39.7
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 5.5e-15 85.5 121 41.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.6e-14 84.0 149 36.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.1e-14 83.6 198 34.3
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.1e-14 83.6 123 40.7
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.0e-14 81.6 126 46.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 6.3e-11 72.0 93 50.5
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 6.3e-11 72.0 205 27.3
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 8.2e-11 71.6 118 43.2
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 8.5e-08 61.6 119 38.7
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.5e-07 60.1 150 34.0
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.7e-06 56.6 150 30.7
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.7e-06 56.6 39 56.4


User provided reference genes

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