Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028067 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.1e-30 136.0 70 100.0
CSS0029505 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.9e-25 118.6 65 93.8
CSS0002521 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 5.5e-25 117.1 66 90.9
CSS0029543 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 7.2e-25 116.7 63 95.2
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.2e-09 64.3 82 52.4
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 3.3e-06 54.7 33 81.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 4.4e-06 54.3 30 90.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.7e-06 53.9 40 70.0
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.7e-06 53.9 40 70.0
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.7e-06 53.9 33 81.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.7e-06 53.9 40 70.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 7.5e-06 53.5 51 58.8
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.5e-06 53.5 33 81.8


User provided reference genes

Program Settings