Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.3e-124 451.1 335 100.0
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 9.6e-88 328.6 182 92.9
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 1.3e-60 238.4 152 75.7
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 5.5e-59 233.0 182 63.2
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 2.2e-55 221.1 193 58.5
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 6.3e-55 219.5 193 60.1
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 1.4e-54 218.4 193 58.5
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 1.8e-54 218.0 182 60.4
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 4.5e-53 213.4 193 57.0
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 7.7e-53 212.6 193 58.0
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 1.5e-51 208.4 184 59.8
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 2.5e-51 207.6 193 54.9
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 6.7e-49 199.5 182 54.9
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.0e-48 198.0 182 53.8
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 2.0e-48 198.0 182 56.0
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 2.0e-48 198.0 182 54.9
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 2.6e-48 197.6 185 55.7
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 3.3e-48 197.2 182 53.8
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 5.7e-48 196.4 193 52.3
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 5.7e-48 196.4 185 55.1
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 5.7e-48 196.4 180 56.7
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 7.5e-48 196.1 182 54.4
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.3e-47 195.3 182 53.3
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.3e-47 195.3 185 55.1
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 1.7e-47 194.9 193 52.3
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 6.3e-47 193.0 193 51.8
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 8.2e-47 192.6 181 55.2
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 8.2e-47 192.6 183 53.6
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 1.1e-46 192.2 185 54.6
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.8e-46 191.4 197 50.8
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.8e-46 191.4 197 50.8
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.8e-46 191.4 193 51.8
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 2.4e-46 191.0 182 53.3
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 2.4e-46 191.0 197 50.3
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 1.2e-45 188.7 197 50.3
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 1.2e-45 188.7 193 52.8
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 1.2e-45 188.7 194 52.1
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 7.7e-45 186.0 193 50.8
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 1.3e-44 185.3 183 51.9
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 1.7e-44 184.9 182 59.9
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 1.5e-43 181.8 185 54.6
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 1.5e-43 181.8 181 51.4
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 1.9e-43 181.4 182 52.7
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 2.5e-43 181.0 190 53.7
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 4.2e-43 180.3 193 51.8
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 5.5e-43 179.9 185 52.4
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 2.7e-42 177.6 181 51.4
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 4.7e-42 176.8 181 51.4
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 4.7e-42 176.8 183 53.6
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 1.4e-41 175.3 193 50.3
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 3.0e-41 174.1 180 48.3
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 3.0e-41 174.1 181 49.2
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 4.0e-41 173.7 181 50.8
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 4.0e-41 173.7 181 50.8
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 4.0e-41 173.7 183 48.6
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 8.8e-41 172.6 183 50.8
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 2.0e-40 171.4 182 50.0
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 4.4e-40 170.2 193 48.7
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 4.4e-40 170.2 179 48.6
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 9.8e-40 169.1 193 48.7
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 2.2e-39 167.9 183 50.8
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 2.8e-39 167.5 203 47.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 6.3e-39 166.4 194 47.9
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 9.1e-38 162.5 183 47.5
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 5.9e-37 159.8 193 47.2
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 1.4e-33 148.7 183 44.3
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 2.0e-32 144.8 109 59.6
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 2.0e-32 144.8 186 48.4
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 6.3e-31 139.8 171 46.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 2.7e-29 134.4 108 58.3
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 7.8e-29 132.9 150 48.7
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 4.3e-27 127.1 183 37.2
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 2.6e-24 117.9 184 44.6
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 4.4e-24 117.1 84 60.7
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 5.8e-24 116.7 169 41.4
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 1.4e-22 112.1 149 43.0
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 1.6e-21 108.6 182 36.3
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 1.6e-21 108.6 193 40.4
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.6e-21 108.6 84 56.0
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 3.9e-20 104.0 186 38.7
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 8.6e-20 102.8 58 75.9
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 2.5e-19 101.3 84 52.4
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.8e-18 97.8 84 48.8
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 2.8e-18 97.8 84 48.8
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 9.8e-16 89.4 84 46.4
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 2.9e-15 87.8 83 48.2
BraA03t09431Z Brassica rapa HOM05D007455 ORTHO05D009431 2.7e-13 81.3 177 31.1
A03p00400 Brassica napus HOM05D007455 ORTHO05D009431 7.8e-13 79.7 177 30.5
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 3.9e-12 77.4 176 29.5
C03p00670 Brassica napus HOM05D007455 ORTHO05D009431 5.0e-12 77.0 175 29.7
BolC3t12630H Brassica oleracea HOM05D007455 ORTHO05D009431 5.0e-12 77.0 175 29.7
BcaB01g06086 Brassica carinata HOM05D007455 ORTHO05D009431 1.1e-11 75.9 175 29.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.5e-11 74.7 167 29.9
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 9.5e-11 72.8 191 29.3
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 1.2e-10 72.4 194 28.4
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.6e-10 72.0 107 34.6
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.1e-10 71.6 107 34.6
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 2.8e-10 71.2 85 38.8
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 6.2e-10 70.1 134 29.9
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 8.1e-10 69.7 85 37.6
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 1.4e-09 68.9 85 37.6
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 5.2e-09 67.0 159 29.6
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 5.2e-09 67.0 159 29.6
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 6.8e-09 66.6 198 27.8
PGR042G0769 Punica granatum HOM05D007083 ORTHO05D008801 6.8e-09 66.6 133 28.6
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 8.9e-09 66.2 190 28.4
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 1.5e-08 65.5 173 25.4
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 2.0e-08 65.1 164 30.5
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 2.6e-08 64.7 190 28.9
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 2.6e-08 64.7 184 28.3
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 2.6e-08 64.7 176 27.8
COL.COLO4_21446 Corchorus olitorius HOM05D007383 ORTHO05D009254 3.4e-08 64.3 131 31.3
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 4.4e-08 63.9 192 28.1
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 7.5e-08 63.2 112 29.5
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 7.5e-08 63.2 182 26.4
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 1.3e-07 62.4 170 27.6
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 1.3e-07 62.4 176 23.3
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 1.3e-07 62.4 143 28.0
Ciclev10019863m.g Citrus clementina HOM05D007383 ORTHO05D009254 1.7e-07 62.0 99 34.3
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 1.7e-07 62.0 166 28.9
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 2.2e-07 61.6 103 27.2
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 2.2e-07 61.6 148 28.4
Duzib084G1098 Durio zibethinus HOM05D007383 ORTHO05D009254 4.9e-07 60.5 128 28.9
Atru.chr9.2397 Acer truncatum HOM05D007383 ORTHO05D009254 8.3e-07 59.7 92 32.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 8.3e-07 59.7 160 28.1
AUR62030852 Chenopodium quinoa HOM05D007383 ORTHO05D009254 8.3e-07 59.7 125 31.2
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 8.3e-07 59.7 100 27.0
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 8.3e-07 59.7 119 31.1
SGA_v2.0_scaffold196G40934 Striga asiatica HOM05D007383 ORTHO05D009254 8.3e-07 59.7 107 32.7
CSS0012921 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.1e-06 59.3 100 27.0
CSS0015280 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 1.1e-06 59.3 100 27.0
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 1.1e-06 59.3 100 26.0
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 1.1e-06 59.3 101 28.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.1e-06 59.3 109 32.1
A09p11950 Brassica napus HOM05D000891 ORTHO05D000761 1.4e-06 58.9 108 27.8
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 1.4e-06 58.9 97 34.0
Nn7g36379 Nelumbo nucifera HOM05D000891 ORTHO05D000761 1.4e-06 58.9 106 27.4
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.4e-06 58.9 104 34.6
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.4e-06 58.9 104 34.6
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 1.4e-06 58.9 112 28.6
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.9e-06 58.5 164 25.6
CSS0011148 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 1.9e-06 58.5 110 26.4
AUR62027012 Chenopodium quinoa HOM05D007383 ORTHO05D009254 1.9e-06 58.5 125 31.2
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 1.9e-06 58.5 183 22.4
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 1.9e-06 58.5 167 26.3
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 2.4e-06 58.2 107 28.0
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.4e-06 58.2 188 25.0
BcaC04g22899 Brassica carinata HOM05D000891 ORTHO05D000761 2.4e-06 58.2 108 26.9
C09p14070 Brassica napus HOM05D000891 ORTHO05D000761 2.4e-06 58.2 108 26.9
BolC9t54304H Brassica oleracea HOM05D000891 ORTHO05D000761 2.4e-06 58.2 108 26.9
BraA09t36840Z Brassica rapa HOM05D000891 ORTHO05D000761 2.4e-06 58.2 108 26.9
Oeu022178.1 Olea europaea HOM05D007383 ORTHO05D009254 2.4e-06 58.2 107 30.8
TWI60G0064 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 2.4e-06 58.2 197 25.4
CSS0003198 Camellia sinensis var. sinensis HOM05D000424 ORTHO05D000355 3.2e-06 57.8 96 27.1
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 3.2e-06 57.8 193 26.4
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 3.2e-06 57.8 180 26.7
Sabra02G0185300 Salix brachista HOM05D002628 ORTHO05D002785 3.2e-06 57.8 114 28.1
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.2e-06 57.8 200 27.0
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 4.1e-06 57.4 110 26.4
MSTRG.20959 Avicennia marina HOM05D001779 ORTHO05D001753 4.1e-06 57.4 95 28.4
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.1e-06 57.4 109 27.5
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 4.1e-06 57.4 152 27.0
C09p57580 Brassica napus HOM05D007340 ORTHO05D008979 5.4e-06 57.0 111 27.0
BolC9t58627H Brassica oleracea HOM05D007340 ORTHO05D008979 5.4e-06 57.0 111 27.0
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 5.4e-06 57.0 112 25.9
Dinv42956 Davidia involucrata HOM05D038832 ORTHO05D031298 5.4e-06 57.0 38 76.3
Dinv43143 Davidia involucrata HOM05D038832 ORTHO05D031298 5.4e-06 57.0 38 76.3
Migut.G00440 Erythranthe guttata HOM05D007383 ORTHO05D009254 5.4e-06 57.0 99 33.3
Nitab4.5_0001401g0200 Nicotiana tabacum HOM05D007083 ORTHO05D008801 5.4e-06 57.0 145 27.6
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 5.4e-06 57.0 132 26.5
THA.LOC104803714 Tarenaya hassleriana HOM05D007383 ORTHO05D009254 5.4e-06 57.0 88 30.7
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 7.1e-06 56.6 196 26.0
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 7.1e-06 56.6 110 25.5
CARHR109130 Cardamine hirsuta HOM05D000891 ORTHO05D000761 7.1e-06 56.6 117 27.4
Lalb_Chr13g0290421 Lupinus albus HOM05D000424 ORTHO05D000355 7.1e-06 56.6 130 26.9
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 7.1e-06 56.6 99 26.3
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 7.1e-06 56.6 99 26.3
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 7.1e-06 56.6 174 26.4
Ah.01g024620 Amaranthus hybridus HOM05D007383 ORTHO05D009254 9.2e-06 56.2 135 28.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 9.2e-06 56.2 164 22.6
FAN05G1392 Fragaria x ananassa HOM05D000891 ORTHO05D000761 9.2e-06 56.2 106 28.3
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 9.2e-06 56.2 97 33.0
Sabra11G0096300 Salix brachista HOM05D000891 ORTHO05D008746 9.2e-06 56.2 110 28.2
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 9.2e-06 56.2 175 25.1


User provided reference genes

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