Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.4e-251 871.7 447 100.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.8e-244 847.8 447 98.0
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.6e-210 736.1 447 85.0
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.2e-196 689.1 447 79.2
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.2e-191 672.5 459 76.5
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 2.8e-191 672.2 448 75.7
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.5e-189 665.2 398 85.4
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 4.5e-189 664.8 451 76.3
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 4.5e-189 664.8 449 76.2
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 4.7e-186 654.8 451 75.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.2e-185 651.4 450 76.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.5e-184 649.8 448 73.2
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.0e-184 649.4 448 73.2
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.6e-184 649.0 462 72.3
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 3.3e-184 648.7 448 73.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.7e-183 646.4 448 75.2
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.2e-183 646.0 449 74.2
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.8e-183 645.6 420 79.0
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.7e-181 639.0 452 72.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.5e-180 634.4 451 72.5
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.5e-179 633.3 451 71.2
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 2.5e-179 632.5 448 72.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 9.4e-179 630.6 461 70.3
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 1.4e-177 626.7 447 72.9
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 5.2e-177 624.8 419 74.9
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.4e-176 622.1 450 71.1
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 4.4e-176 621.7 459 71.2
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.7e-175 618.6 452 70.8
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 6.3e-175 617.8 451 72.5
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.0e-173 612.8 453 72.8
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.0e-173 612.8 452 70.1
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.0e-172 610.5 446 72.6
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.3e-172 609.4 447 71.4
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.2e-170 603.6 428 73.8
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.1e-170 602.8 436 72.9
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 3.6e-170 602.1 450 69.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.6e-170 602.1 437 72.1
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 2.3e-169 599.4 416 71.2
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.5e-168 596.7 427 72.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 3.4e-168 595.5 446 67.9
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.5e-168 594.3 451 70.1
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 9.8e-168 594.0 435 72.4
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.3e-167 593.6 407 74.0
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.8e-167 592.4 435 72.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 8.3e-167 590.9 417 72.2
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.8e-166 589.7 450 68.9
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 7.8e-165 584.3 427 72.4
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.0e-164 583.9 367 80.4
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.9e-164 582.4 450 68.2
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 2.1e-162 576.2 451 67.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 6.1e-162 574.7 437 68.9
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.5e-160 570.1 447 67.1
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 1.5e-160 570.1 417 69.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 3.4e-160 568.9 422 69.2
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.4e-160 568.5 448 67.6
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 2.9e-159 565.8 336 84.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.4e-159 564.7 447 66.2
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 3.2e-158 562.4 392 72.4
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-158 561.2 448 65.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.6e-157 560.1 476 61.1
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.6e-157 560.1 426 68.3
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 3.5e-157 558.9 416 68.5
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 4.6e-157 558.5 424 69.8
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 6.0e-157 558.1 452 64.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 5.6e-155 551.6 504 60.5
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 7.3e-155 551.2 456 65.4
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 2.8e-154 549.3 456 64.3
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 6.2e-154 548.1 455 63.1
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 8.0e-154 547.7 479 62.6
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 4.0e-153 545.4 476 62.6
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.4e-152 542.3 449 63.5
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 5.8e-152 541.6 397 71.0
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.3e-151 540.4 454 61.9
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.3e-151 540.4 497 62.6
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 4.9e-151 538.5 411 68.6
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.4e-150 537.0 475 61.7
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 3.5e-149 532.3 456 62.1
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.6e-149 531.9 478 61.3
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 7.8e-149 531.2 456 61.4
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.0e-148 530.8 510 59.6
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.3e-148 530.4 357 73.4
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 3.0e-148 529.3 449 62.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.5e-147 526.9 360 73.6
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.9e-147 526.6 379 73.4
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 4.3e-147 525.4 380 71.8
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 5.6e-147 525.0 438 63.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 7.3e-147 524.6 446 62.3
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 9.5e-147 524.2 422 65.4
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 1.6e-146 523.5 457 61.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.1e-146 523.1 447 63.5
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.6e-146 522.3 443 63.2
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.6e-146 522.3 459 59.9
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 4.7e-146 521.9 406 66.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 6.2e-146 521.5 457 60.8
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-145 520.8 448 62.9
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.8e-145 520.0 420 64.5
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 1.8e-145 520.0 485 61.6
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 1.8e-145 520.0 358 72.1
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 5.8e-144 515.0 402 65.7
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 4.9e-143 511.9 449 61.5
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 6.4e-143 511.5 447 60.6
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 7.1e-142 508.1 367 71.4
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 9.2e-142 507.7 422 64.9
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 7.8e-141 504.6 429 61.5
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.3e-140 503.1 473 58.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.1e-139 500.7 402 66.9
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.5e-139 500.4 463 60.0
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.5e-139 499.6 396 65.4
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 3.6e-138 495.7 439 60.1
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 6.2e-138 495.0 431 60.3
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.3e-135 487.3 331 73.4
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 2.5e-131 473.0 453 56.5
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 5.6e-131 471.9 317 73.2
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 9.6e-131 471.1 409 60.1
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.1e-129 467.6 448 55.4
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 6.9e-129 464.9 448 55.1
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.3e-127 460.7 409 59.2
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.9e-127 458.8 453 57.2
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 4.2e-126 455.7 379 60.7
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.6e-125 452.2 465 52.7
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 5.6e-123 445.3 465 51.8
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.8e-122 443.0 391 62.4
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 9.0e-121 438.0 459 54.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.7e-119 433.7 316 69.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 2.9e-119 433.0 449 52.8
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.1e-118 431.0 268 78.0
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.2e-118 429.1 305 73.4
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.2e-117 427.6 355 61.4
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.0e-117 425.2 419 53.9
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.3e-116 424.1 430 53.3
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 9.6e-115 417.9 416 55.5
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 3.2e-110 402.9 334 59.9
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-104 383.6 346 57.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.3e-100 370.2 456 46.7
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.9e-99 367.1 410 51.2
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.6e-98 364.0 409 51.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.7e-98 362.8 408 51.0
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.5e-96 357.5 445 46.7
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.5e-96 357.5 291 63.9
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 5.9e-96 355.5 410 50.0
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.9e-96 355.5 268 70.9
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.8e-95 352.8 374 50.3
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.9e-92 342.8 345 51.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 4.3e-91 339.3 434 47.9
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-88 330.1 365 51.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.4e-88 329.7 365 51.0
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 3.9e-84 316.2 350 51.7
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 1.1e-83 314.7 212 74.5
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 5.7e-83 312.4 354 50.3
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 2.3e-76 290.4 381 45.7
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 3.2e-70 270.0 453 41.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 8.0e-69 265.4 452 40.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.0e-60 236.5 494 35.0
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.5e-51 208.0 153 67.3
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.3e-50 202.2 144 68.1
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 1.2e-45 188.3 191 50.8
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-42 178.3 139 67.6
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 4.4e-35 153.3 94 75.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.9e-34 150.6 166 50.0
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-32 144.8 146 59.6
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.5e-30 138.3 133 57.1
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 4.3e-30 136.7 151 49.0
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.6e-29 133.7 84 81.0
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 2.0e-27 127.9 201 41.3
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 6.4e-26 122.9 119 51.3
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 7.1e-25 119.4 99 56.6
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 8.6e-23 112.5 94 57.4
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.1e-22 112.1 68 79.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 4.3e-22 110.2 101 54.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 5.6e-22 109.8 94 57.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 8.1e-21 105.9 77 72.7
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 8.4e-18 95.9 135 44.4
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 1.4e-17 95.1 151 42.4
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 5.4e-17 93.2 304 28.9
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.1e-14 85.5 196 32.7
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 6.2e-13 79.7 96 41.7
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 1.1e-12 79.0 81 60.5
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-12 78.2 81 60.5
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.2e-11 75.5 62 61.3
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-11 74.3 190 34.7
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 5.8e-11 73.2 49 67.3
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.9e-10 70.9 54 53.7
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.9e-10 70.9 54 53.7
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.4e-10 69.7 190 32.6
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 6.0e-08 63.2 39 74.4
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.7e-07 61.6 83 38.6
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 1.9e-06 58.2 42 69.0


User provided reference genes

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