Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 9.7e-147 523.5 268 100.0
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 7.0e-145 517.3 268 99.3
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 6.1e-56 221.9 305 50.5
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 3.7e-53 212.6 261 57.1
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 3.8e-50 202.6 274 54.4
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 2.6e-38 163.3 294 47.3
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 3.3e-38 162.9 325 42.5
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 9.7e-38 161.4 316 44.3
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 2.5e-33 146.7 239 50.2
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 2.5e-33 146.7 253 47.0
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 3.2e-33 146.4 315 42.2
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 9.4e-33 144.8 316 42.7
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 9.4e-33 144.8 317 42.3
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 8.0e-32 141.7 265 44.9
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 3.0e-31 139.8 343 38.2
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 2.8e-29 133.3 250 47.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.8e-28 130.6 317 38.5
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 7.0e-28 128.6 300 41.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 5.0e-26 122.5 320 37.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.0e-23 113.2 281 38.8
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 3.0e-23 113.2 281 38.8
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.2e-22 111.3 303 37.6
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 3.4e-22 109.8 178 47.8
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 9.8e-22 108.2 304 37.8
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 9.8e-22 108.2 310 37.7
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 1.3e-21 107.8 288 37.5
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.7e-21 107.5 263 39.2
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.7e-21 106.3 320 36.9
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 1.8e-20 104.0 309 39.8
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 5.4e-20 102.4 255 40.4
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.4e-20 102.4 262 37.0
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 7.0e-20 102.1 259 40.5
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.6e-19 100.9 330 37.3
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.0e-19 100.5 309 39.5
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.5e-19 99.8 298 35.9
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.5e-19 99.8 309 39.2
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 3.5e-19 99.8 273 39.6
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 4.5e-19 99.4 285 39.3
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 7.7e-19 98.6 331 36.0
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.3e-18 97.8 255 38.4
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.3e-18 97.8 207 42.0
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.7e-18 97.4 311 39.2
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.7e-18 97.4 320 34.1
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.7e-18 97.4 171 45.0
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 6.6e-18 95.5 299 35.1
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 6.6e-18 95.5 291 36.1
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.5e-17 94.4 302 36.1
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.9e-17 94.0 294 38.1
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.9e-17 94.0 294 38.1
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 2.5e-17 93.6 292 36.3
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 7.2e-17 92.0 286 36.7
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 7.2e-17 92.0 307 38.1
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 7.2e-17 92.0 171 43.9
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 9.5e-17 91.7 306 33.7
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 9.5e-17 91.7 290 36.2
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.8e-16 90.1 311 34.7
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 2.8e-16 90.1 331 34.1
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 3.6e-16 89.7 289 36.7
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 3.6e-16 89.7 316 34.8
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 4.7e-16 89.4 330 34.8
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 8.0e-16 88.6 314 31.8
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 1.4e-15 87.8 330 35.5
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.8e-15 87.4 333 33.0
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 1.8e-15 87.4 288 36.5
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.0e-15 86.7 304 31.2
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 4.0e-15 86.3 163 42.3
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 6.8e-15 85.5 305 33.1
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 8.9e-15 85.1 305 33.8
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.5e-14 84.3 306 35.0
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 2.0e-14 84.0 324 34.0
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.6e-14 83.6 320 33.8
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 2.6e-14 83.6 293 33.8
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.6e-14 83.6 333 34.2
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 3.4e-14 83.2 331 37.2
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.4e-14 83.2 301 33.9
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 4.4e-14 82.8 319 32.6
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 5.7e-14 82.4 310 33.2
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 7.5e-14 82.0 292 35.3
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 7.5e-14 82.0 312 33.3
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.3e-13 81.3 331 30.8
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.3e-13 81.3 311 31.8
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.3e-13 81.3 296 35.1
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.3e-13 81.3 227 37.0
MSTRG.14193 Avicennia marina HOM05D033380 ORTHO05D026975 2.2e-13 80.5 247 34.8
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.2e-13 80.5 325 32.3
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 2.2e-13 80.5 327 35.8
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 2.2e-13 80.5 325 33.2
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.8e-13 80.1 298 34.9
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 2.8e-13 80.1 249 38.6
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.7e-13 79.7 296 35.1
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 4.9e-13 79.3 304 33.9
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.9e-13 79.3 290 33.8
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 8.3e-13 78.6 247 38.9
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.8e-12 77.4 314 31.8
Sabra04G0022600 Salix brachista HOM05D004441 ORTHO05D003109 1.8e-12 77.4 331 34.4
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.4e-12 77.0 315 31.7
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.4e-12 77.0 333 32.7
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 3.2e-12 76.6 313 35.5
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.2e-12 76.6 326 31.9
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 3.2e-12 76.6 307 30.9
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 3.2e-12 76.6 331 35.0
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 4.1e-12 76.3 291 32.0
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 4.1e-12 76.3 302 34.4
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 9.2e-12 75.1 309 32.4
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 9.2e-12 75.1 309 32.7
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 2.0e-11 73.9 342 29.8
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.7e-11 73.6 336 31.8
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 5.9e-11 72.4 300 31.3
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 5.9e-11 72.4 284 35.9
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 7.8e-11 72.0 298 34.9
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 7.8e-11 72.0 296 33.4
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.0e-10 71.6 267 36.7
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 1.0e-10 71.6 270 33.7
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 1.3e-10 71.2 292 32.9
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 1.7e-10 70.9 309 35.6
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 2.3e-10 70.5 288 32.3
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 3.9e-10 69.7 295 33.9
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 3.9e-10 69.7 305 31.8
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 5.0e-10 69.3 309 30.7
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 8.6e-10 68.6 320 31.2
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 8.6e-10 68.6 299 32.8
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 8.6e-10 68.6 267 36.7
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 2.5e-09 67.0 285 31.2
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 3.3e-09 66.6 309 31.7
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 4.3e-09 66.2 248 33.9
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 5.6e-09 65.9 341 30.8
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 7.3e-09 65.5 297 33.7
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 7.3e-09 65.5 297 33.7
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 9.5e-09 65.1 301 31.9
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 1.2e-08 64.7 290 31.4
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.2e-08 64.7 298 29.5
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.2e-08 64.7 298 29.5
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 2.1e-08 63.9 290 31.7
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 2.1e-08 63.9 290 31.7
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 2.1e-08 63.9 290 31.7
Migut.H01045 Erythranthe guttata HOM05D009304 ORTHO05D026975 2.1e-08 63.9 290 33.1
Lj3g0005406 Lotus japonicus HOM05D010177 ORTHO05D003109 2.8e-08 63.5 296 33.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 3.6e-08 63.2 230 33.0
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 4.7e-08 62.8 263 33.1
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 6.1e-08 62.4 194 38.7
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 8.0e-08 62.0 238 33.6
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 8.0e-08 62.0 296 32.1
Lalb_Chr22g0356441 Lupinus albus HOM05D010177 ORTHO05D003109 8.0e-08 62.0 296 30.7
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.0e-07 61.6 238 32.8
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 1.0e-07 61.6 205 37.6
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 1.0e-07 61.6 300 31.3
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.3e-07 60.5 287 32.1
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 3.1e-07 60.1 266 33.1
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 3.1e-07 60.1 259 35.5
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 4.0e-07 59.7 278 34.5
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 5.2e-07 59.3 294 31.6
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 5.2e-07 59.3 311 30.5
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 5.2e-07 59.3 249 33.3
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 5.2e-07 59.3 253 30.0
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 6.8e-07 58.9 290 30.7
BraA06t23983Z Brassica rapa HOM05D004441 ORTHO05D003109 6.8e-07 58.9 306 30.7
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 6.8e-07 58.9 201 36.3
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 6.8e-07 58.9 245 34.7
Solyc04g007740.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 6.8e-07 58.9 99 44.4
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 6.8e-07 58.9 252 36.5
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.9e-07 58.5 242 30.6
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 8.9e-07 58.5 295 32.5
Phvul.005G106600 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 8.9e-07 58.5 273 31.1
Solyc11g043180.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 8.9e-07 58.5 99 42.4
Glyma.U031322 Glycine max HOM05D010177 ORTHO05D003109 1.2e-06 58.2 278 34.9
Lsat_1_v5_gn_3_39360 Lactuca sativa HOM05D009304 ORTHO05D003109 1.5e-06 57.8 304 28.9
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.5e-06 57.8 279 30.8
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 2.6e-06 57.0 253 32.8
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 3.4e-06 56.6 313 31.0
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 3.4e-06 56.6 190 35.8
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 4.4e-06 56.2 332 31.9
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 5.8e-06 55.8 293 31.4
Eucgr.K00944 Eucalyptus grandis HOM05D010652 ORTHO05D003109 5.8e-06 55.8 312 30.4
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 7.5e-06 55.5 299 29.8
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 7.5e-06 55.5 299 29.8
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 7.5e-06 55.5 299 29.8
Solyc08g045770.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 7.5e-06 55.5 99 43.4
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 7.5e-06 55.5 282 31.6
A06p07830 Brassica napus HOM05D004441 ORTHO05D003109 9.8e-06 55.1 304 30.3


User provided reference genes

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