Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.6e-279 963.0 477 100.0
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.0e-277 956.4 477 99.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 5.0e-271 937.2 477 98.1
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 3.9e-231 804.7 484 83.3
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.5e-227 791.2 490 81.8
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.7e-224 781.9 484 81.4
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 3.0e-223 778.5 484 80.0
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.5e-222 775.4 485 79.4
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 5.3e-220 767.7 483 77.0
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 5.3e-220 767.7 483 77.0
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.5e-219 764.6 484 77.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 4.9e-218 761.1 485 77.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 5.5e-217 757.7 484 76.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 3.5e-216 755.0 484 76.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 2.3e-215 752.3 483 76.8
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.9e-215 751.5 483 75.8
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 8.7e-215 750.4 459 82.4
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.1e-214 750.0 484 75.4
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 1.6e-213 746.1 478 76.2
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.1e-212 743.4 484 75.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.4e-212 743.0 483 76.2
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.4e-212 742.3 484 75.0
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.1e-212 741.5 484 75.0
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 6.9e-212 740.7 484 74.6
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.0e-211 739.2 484 76.0
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 2.6e-211 738.8 485 75.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.4e-211 738.4 484 75.0
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.7e-210 736.1 482 74.1
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 2.9e-210 735.3 511 71.2
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 2.9e-210 735.3 484 75.0
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 5.0e-210 734.6 484 75.4
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.9e-209 732.6 484 75.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 2.7e-208 728.8 483 75.2
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 7.9e-208 727.2 484 75.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 3.0e-207 725.3 477 74.4
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 6.7e-207 724.2 477 75.1
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 8.7e-207 723.8 478 74.5
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.5e-206 722.2 484 72.7
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.7e-206 721.1 484 73.6
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 5.7e-206 721.1 478 73.4
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 2.2e-205 719.2 478 73.2
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.3e-205 717.6 477 73.2
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 8.2e-205 717.2 477 73.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 8.2e-205 717.2 483 74.7
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.4e-204 716.5 477 72.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 3.1e-204 715.3 483 72.3
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 9.0e-204 713.8 483 74.1
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.2e-203 713.4 477 71.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.2e-203 713.4 481 75.9
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.2e-203 713.4 485 72.8
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.2e-203 713.4 480 74.6
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.2e-203 713.4 483 74.5
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 1.5e-203 713.0 481 73.4
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 2.0e-203 712.6 477 74.0
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.4e-203 711.8 488 71.3
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 7.7e-203 710.7 480 73.5
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 1.0e-202 710.3 450 76.0
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 1.3e-202 709.9 477 73.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.7e-202 709.5 485 72.6
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 6.5e-202 707.6 477 72.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 8.5e-202 707.2 488 71.1
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 8.5e-202 707.2 477 71.7
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-201 706.8 500 69.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.7e-200 702.2 485 72.2
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 3.6e-200 701.8 485 72.2
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 3.0e-199 698.7 484 70.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 3.9e-199 698.4 484 70.7
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.7e-199 697.6 485 70.3
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 8.8e-199 697.2 485 70.7
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 8.8e-199 697.2 477 71.9
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 4.3e-198 694.9 484 70.9
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 3.7e-197 691.8 479 71.0
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 3.7e-197 691.8 497 69.4
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 4.8e-197 691.4 486 70.0
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 4.1e-196 688.3 485 70.5
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 6.9e-196 687.6 478 70.3
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-195 686.0 522 66.3
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 2.0e-195 686.0 478 69.9
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.4e-195 685.3 507 68.0
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.2e-194 682.6 481 69.6
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.1e-193 680.2 477 71.7
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 1.4e-193 679.9 479 69.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 1.9e-193 679.5 481 69.0
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 5.5e-193 677.9 479 69.9
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 5.5e-193 677.9 477 69.8
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.2e-192 676.8 570 61.8
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-192 676.4 486 67.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.6e-192 676.4 479 69.1
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.7e-192 675.6 479 69.9
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.7e-192 675.6 479 69.9
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 2.7e-192 675.6 478 69.9
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.5e-190 669.8 482 68.5
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 7.4e-190 667.5 503 66.8
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 7.4e-190 667.5 490 70.6
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.3e-189 664.5 478 68.6
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.0e-186 657.1 464 71.8
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 5.0e-186 654.8 489 68.9
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 8.5e-186 654.1 477 67.1
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.5e-185 653.3 415 75.9
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.2e-184 650.2 487 66.7
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 1.6e-184 649.8 476 67.2
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 4.4e-182 641.7 433 74.4
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 2.8e-181 639.0 478 66.3
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.1e-180 637.1 496 63.7
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 2.0e-179 632.9 552 62.1
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.0e-179 632.9 428 71.7
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.3e-178 630.2 518 62.9
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.7e-176 621.7 415 73.3
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.2e-170 602.8 480 64.2
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.1e-169 600.5 487 60.6
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 9.4e-169 597.4 486 63.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.4e-166 589.0 413 73.8
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.7e-165 586.6 475 61.3
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 5.9e-163 578.2 413 70.2
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 1.0e-162 577.4 486 59.3
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 5.0e-162 575.1 482 59.5
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 4.7e-144 515.4 358 71.8
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 9.8e-142 507.7 490 56.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 2.8e-136 489.6 484 54.1
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 4.2e-100 369.4 251 69.3
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 6.0e-99 365.5 598 38.0
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 4.5e-94 349.4 517 41.2
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 1.4e-92 344.4 259 68.0
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-86 324.7 217 78.8
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 4.5e-78 296.2 182 73.1
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.6e-75 287.7 210 63.3
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.8e-74 284.3 255 56.1
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.9e-74 283.1 381 47.2
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 5.7e-73 279.3 543 34.8
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.4e-66 258.1 188 75.0
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.4e-63 248.1 182 63.7
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 5.3e-63 246.1 250 53.6
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 7.7e-54 215.7 474 32.1
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.7e-48 198.0 171 61.4
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.8e-47 194.5 432 33.8
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 5.7e-41 172.9 383 33.4
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-39 168.7 423 29.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-39 168.3 448 29.0
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-33 148.7 212 44.3
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 4.1e-31 140.2 218 39.9
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 4.9e-24 116.7 188 44.7
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.8e-18 98.2 70 74.3
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-17 95.5 132 40.9
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.3e-16 92.0 70 70.0
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 2.5e-12 77.8 71 62.0
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.6e-09 67.8 71 54.9
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 3.4e-09 67.4 70 55.7
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 4.4e-09 67.0 107 39.3
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 2.9e-08 64.3 84 51.2
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-07 62.0 70 50.0


User provided reference genes

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