Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 8.1e-202 706.8 351 100.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 9.4e-182 640.2 337 95.5
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.4e-137 491.5 343 74.1
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.5e-126 456.8 343 69.4
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.3e-119 433.0 343 67.1
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.8e-116 421.4 343 65.9
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 8.3e-114 414.5 344 63.7
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.1e-105 387.5 344 59.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 5.4e-105 385.2 345 60.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-104 384.0 344 60.2
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 2.7e-104 382.9 343 60.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 5.1e-103 378.6 345 57.1
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 7.3e-102 374.8 343 58.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 9.6e-102 374.4 344 56.7
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 3.6e-101 372.5 343 58.6
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.0e-100 369.0 353 56.9
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.5e-99 367.1 344 57.6
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 5.8e-99 365.2 331 61.0
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.9e-98 362.8 344 57.8
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 4.9e-98 362.1 339 56.3
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 6.4e-98 361.7 343 57.1
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-97 360.9 343 55.7
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.4e-97 359.8 342 57.0
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 4.2e-97 359.0 343 56.0
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.3e-97 357.8 337 57.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 1.2e-96 357.5 354 54.8
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.1e-96 356.7 343 56.6
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 4.6e-96 355.5 348 58.9
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 7.8e-96 354.8 346 57.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.8e-96 354.8 343 55.7
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.0e-95 354.4 337 57.3
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.3e-95 354.0 343 56.6
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.0e-95 352.8 343 53.6
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.9e-95 352.4 343 53.4
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.1e-94 350.9 343 56.0
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.5e-94 349.7 344 53.5
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.3e-94 349.0 343 52.8
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.6e-94 348.6 343 52.5
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 9.6e-94 347.8 338 57.4
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.8e-93 346.3 259 70.3
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.8e-93 345.5 343 52.8
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-92 344.4 336 53.9
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 9.0e-92 341.3 343 55.1
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.5e-91 340.5 344 52.0
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 5.8e-91 338.6 342 55.8
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.8e-91 338.6 343 51.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.3e-90 337.4 326 55.5
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 2.2e-90 336.7 343 52.8
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.9e-90 335.5 344 52.6
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 8.4e-90 334.7 352 51.4
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.1e-89 334.3 345 53.6
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 4.2e-89 332.4 342 51.8
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 5.4e-89 332.0 323 55.4
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 9.3e-89 331.3 344 53.8
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.7e-88 329.7 347 51.3
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 4.6e-88 328.9 334 54.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 7.9e-88 328.2 289 60.9
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 1.8e-87 327.0 347 53.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.8e-87 327.0 353 51.3
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.0e-87 326.2 344 50.3
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.1e-87 325.5 346 49.1
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.1e-87 325.5 343 51.6
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 5.1e-87 325.5 343 51.6
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 6.7e-87 325.1 342 52.0
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 1.5e-86 323.9 347 49.6
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 3.3e-86 322.8 350 49.1
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 5.6e-86 322.0 346 50.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 7.4e-86 321.6 341 52.2
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.3e-85 320.9 347 49.3
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.3e-85 320.9 339 51.6
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 6.2e-85 318.5 343 49.3
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 1.1e-84 317.8 347 50.1
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.4e-84 317.4 343 49.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.8e-84 317.0 343 52.2
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 4.0e-84 315.8 347 47.3
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.2e-83 314.3 343 49.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.5e-83 312.4 350 52.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 5.8e-83 312.0 347 48.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 1.7e-82 310.5 343 49.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.9e-82 309.7 338 48.2
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 3.8e-82 309.3 343 50.4
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 4.9e-82 308.9 345 49.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.4e-81 307.4 342 49.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.4e-81 307.4 338 52.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 1.9e-81 307.0 339 49.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.9e-81 307.0 312 54.5
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 1.9e-81 307.0 342 50.3
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 4.2e-81 305.8 340 47.6
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 9.3e-81 304.7 342 49.4
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-80 304.3 338 47.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.7e-80 303.1 336 48.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.0e-80 302.0 312 54.5
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 7.9e-80 301.6 343 49.3
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.8e-79 300.4 340 50.0
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 3.0e-79 299.7 342 48.2
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.1e-79 298.9 342 47.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.1e-78 297.7 341 52.5
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.9e-78 297.0 342 48.0
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.5e-78 296.6 333 48.3
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.3e-78 296.2 345 49.0
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.6e-77 293.9 344 46.8
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.1e-77 293.5 293 56.0
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 6.2e-77 292.0 340 45.6
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 8.2e-77 291.6 341 45.7
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-76 291.2 352 48.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 1.4e-76 290.8 293 51.9
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-76 290.8 339 47.2
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 4.1e-76 289.3 338 46.4
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.0e-75 287.0 347 46.7
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 3.4e-75 286.2 332 50.6
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 3.4e-75 286.2 342 45.9
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 7.6e-75 285.0 343 44.6
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.0e-74 284.6 338 49.1
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.7e-74 283.9 338 46.2
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-74 283.5 292 51.7
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 6.5e-74 282.0 338 47.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.9e-73 280.4 329 49.5
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.2e-72 277.7 331 45.6
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.0e-71 274.6 307 49.8
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.8e-71 273.9 307 49.8
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 8.7e-71 271.6 341 46.6
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.1e-70 271.2 345 46.1
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.5e-70 270.8 279 54.1
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 7.4e-70 268.5 344 45.9
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.3e-69 267.7 345 46.1
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.3e-69 265.4 336 44.9
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 3.9e-63 246.1 333 45.3
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 5.7e-62 242.3 291 45.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 4.5e-59 232.6 294 45.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.1e-57 228.0 329 41.0
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.6e-56 223.0 198 57.1
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.3e-55 220.3 322 41.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 3.0e-55 219.9 299 41.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.0e-55 219.9 336 39.9
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.7e-54 215.7 339 38.3
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 7.7e-51 205.3 237 46.0
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 5.0e-50 202.6 338 39.1
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 8.0e-48 195.3 270 44.1
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 9.7e-46 188.3 211 45.0
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.7e-45 186.4 137 63.5
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.9e-42 176.8 336 35.7
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.9e-42 176.8 137 61.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 5.0e-42 176.0 324 39.2
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 9.4e-41 171.8 129 62.0
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 5.6e-25 119.4 103 54.4
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 6.6e-18 95.9 132 44.7
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.3e-09 67.0 46 67.4
Actinidia19336 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.8e-08 63.9 71 49.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.8e-07 61.2 153 27.5


User provided reference genes

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