Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028016 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 1.3e-61 239.6 120 100.0
CSS0036049 Camellia sinensis var. sinensis HOM05D006149 ORTHO05D007341 2.0e-43 179.1 89 100.0
Dinv42191 Davidia involucrata HOM05D006149 ORTHO05D007341 1.4e-31 139.8 89 80.9
Dinv15763 Davidia involucrata HOM05D006149 ORTHO05D007341 2.0e-30 136.0 89 77.5
Actinidia05494 Actinidia chinensis HOM05D006149 ORTHO05D007341 2.8e-29 132.1 92 78.3
Actinidia27971 Actinidia chinensis HOM05D006149 ORTHO05D007341 4.8e-29 131.3 92 75.0
Rhsim11G0160200 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.4e-28 129.8 89 76.4
vmacro19450 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 2.6e-27 125.6 90 75.6
Rhsim05G0088300 Rhododendron simsii HOM05D006149 ORTHO05D007341 1.0e-26 123.6 90 75.6
Lj9A321G81 Lonicera japonica HOM05D006149 ORTHO05D007341 8.0e-24 114.0 88 70.5
Sopen01g049800 Solanum pennellii HOM05D006149 ORTHO05D007341 2.3e-23 112.5 88 70.5
PGSC0003DMG400025768 Solanum tuberosum HOM05D006149 ORTHO05D007341 2.3e-23 112.5 88 70.5
Nitab4.5_0002815g0010 Nicotiana tabacum HOM05D006149 ORTHO05D007341 3.0e-23 112.1 88 70.5
CAN.G1231.7 Capsicum annuum HOM05D006149 ORTHO05D007341 5.2e-23 111.3 88 68.2
TWI32G0763 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 6.7e-23 110.9 89 67.4
Nitab4.5_0005392g0090 Nicotiana tabacum HOM05D006149 ORTHO05D007341 8.8e-23 110.5 88 69.3
Solyc01g107610.4 Solanum lycopersicum HOM05D006149 ORTHO05D007341 1.5e-22 109.8 88 69.3
vmacro02004 Vaccinium macrocarpon HOM05D006149 ORTHO05D007341 5.7e-22 107.8 91 65.9
SalBow6G4084 Salvia bowleyana HOM05D006149 ORTHO05D007341 1.3e-21 106.7 88 64.8
Nn4g25119 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.2e-21 105.9 89 64.0
PGR142G0815 Punica granatum HOM05D006149 ORTHO05D007341 2.2e-21 105.9 90 62.2
Nn1g04703 Nelumbo nucifera HOM05D006149 ORTHO05D007341 2.8e-21 105.5 89 65.2
DCAR_001643 Daucus carota HOM05D006149 ORTHO05D007341 3.7e-21 105.1 83 67.5
Prupe.8G134800 Prunus persica HOM05D006149 ORTHO05D007341 3.7e-21 105.1 89 69.7
TWI34G0529 Tripterygium wilfordii HOM05D006149 ORTHO05D007341 4.8e-21 104.8 89 64.0
unitig_22.g5723 Utricularia gibba HOM05D006149 ORTHO05D007341 6.3e-21 104.4 88 64.8
AUR62010304 Chenopodium quinoa HOM05D006149 ORTHO05D007341 8.3e-21 104.0 90 65.6
AUR62039082 Chenopodium quinoa HOM05D006149 ORTHO05D007341 8.3e-21 104.0 90 65.6
Manes.10G076500 Manihot esculenta HOM05D006149 ORTHO05D007341 1.1e-20 103.6 89 64.0
Potri.001G300300 Populus trichocarpa HOM05D006149 ORTHO05D007341 1.1e-20 103.6 89 64.0
Migut.B00388 Erythranthe guttata HOM05D006149 ORTHO05D007341 1.4e-20 103.2 93 67.7
Lsat_1_v5_gn_9_111221 Lactuca sativa HOM05D006149 ORTHO05D007341 3.1e-20 102.1 90 63.3
Sabra16G0188500 Salix brachista HOM05D006149 ORTHO05D007341 7.0e-20 100.9 90 60.0
MD05G1088900 Malus domestica HOM05D006149 ORTHO05D007341 1.2e-19 100.1 112 54.5
SGA_v2.0_scaffold225G43080 Striga asiatica HOM05D006149 ORTHO05D007341 1.2e-19 100.1 88 63.6
Sabra09G0073900 Salix brachista HOM05D006149 ORTHO05D007341 1.6e-19 99.8 79 67.1
Sc08g0001390 Simmondsia chinensis HOM05D006149 ORTHO05D007341 2.0e-19 99.4 92 58.7
MD05G1089500 Malus domestica HOM05D006149 ORTHO05D007341 2.7e-19 99.0 94 61.7
Gohir.A03G186300 Gossypium hirsutum HOM05D006149 ORTHO05D007341 5.9e-19 97.8 89 61.8
Gohir.D02G207100 Gossypium hirsutum HOM05D006149 ORTHO05D007341 5.9e-19 97.8 89 61.8
Gorai.005G235000 Gossypium raimondii HOM05D006149 ORTHO05D007341 5.9e-19 97.8 89 61.8
HanXRQChr02g0033021 Helianthus annuus HOM05D006149 ORTHO05D007341 1.3e-18 96.7 91 60.4
Cpa.g.sc76.22 Carica papaya HOM05D006149 ORTHO05D007341 2.9e-18 95.5 97 59.8
MSTRG.16714 Avicennia marina HOM05D006149 ORTHO05D007341 3.8e-18 95.1 89 59.6
COL.COLO4_32597 Corchorus olitorius HOM05D006149 ORTHO05D007341 3.8e-18 95.1 89 61.8
HanXRQChr03g0070291 Helianthus annuus HOM05D006149 ORTHO05D007341 3.8e-18 95.1 91 59.3
TAR628G0594 Trochodendron aralioides HOM05D006149 ORTHO05D007341 3.8e-18 95.1 79 60.8
Glyma.20G128800 Glycine max HOM05D006149 ORTHO05D007341 6.5e-18 94.4 89 59.6
RcHm_v2.0_Chr6g0255351 Rosa chinensis HOM05D006149 ORTHO05D007341 6.5e-18 94.4 89 61.8
Duzib052G0317 Durio zibethinus HOM05D006149 ORTHO05D007341 8.5e-18 94.0 89 61.8
Eucgr.E02957 Eucalyptus grandis HOM05D006149 ORTHO05D007341 8.5e-18 94.0 99 59.6
Ca_11076_v3 Cicer arietinum L. HOM05D006149 ORTHO05D007341 1.1e-17 93.6 89 60.7
PSO541G1364 Papaver somniferum HOM05D006149 ORTHO05D007341 1.1e-17 93.6 89 59.6
PSO675G5876 Papaver somniferum HOM05D006149 ORTHO05D007341 1.5e-17 93.2 89 59.6
Psat6g219120 Pisum sativum HOM05D006149 ORTHO05D007341 2.5e-17 92.4 89 59.6
VMungo0720G1566 Vigna mungo HOM05D006149 ORTHO05D007341 2.5e-17 92.4 89 58.4
Glyma.10G262200 Glycine max HOM05D006149 ORTHO05D007341 3.2e-17 92.0 89 57.3
Peaxi162Scf00016g02334 Petunia axillaris HOM05D006149 ORTHO05D007341 3.2e-17 92.0 88 64.8
arahy.Tifrunner.gnm1.ann1.0F7AFP Arachis hypogaea HOM05D006149 ORTHO05D007341 4.2e-17 91.7 90 62.2
arahy.Tifrunner.gnm1.ann1.GUMB1Z Arachis hypogaea HOM05D006149 ORTHO05D007341 4.2e-17 91.7 90 62.2
CiPaw.05G011400 Carya illinoinensis HOM05D006149 ORTHO05D007341 4.2e-17 91.7 89 60.7
Lj5g0003815 Lotus japonicus HOM05D006149 ORTHO05D007341 4.2e-17 91.7 89 61.8
Medtr1g107435 Medicago truncatula HOM05D006149 ORTHO05D007341 5.5e-17 91.3 89 58.4
TAR376G0787 Trochodendron aralioides HOM05D006149 ORTHO05D007341 5.5e-17 91.3 80 62.5
Phvul.007G040000 Phaseolus vulgaris HOM05D006149 ORTHO05D007341 7.2e-17 90.9 89 58.4
BcaC04g22139 Brassica carinata HOM05D006149 ORTHO05D007341 1.2e-16 90.1 89 58.4
C07p08530 Brassica napus HOM05D006149 ORTHO05D007341 1.2e-16 90.1 89 58.4
BolC7t41265H Brassica oleracea HOM05D006149 ORTHO05D007341 1.2e-16 90.1 89 58.4
AT2G15270 Arabidopsis thaliana HOM05D006149 ORTHO05D007341 1.6e-16 89.7 89 58.4
BcaC06g36046 Brassica carinata HOM05D006149 ORTHO05D007341 1.6e-16 89.7 89 57.3
Carub.0003s2910 Capsella rubella HOM05D006149 ORTHO05D007341 2.1e-16 89.4 89 58.4
Hund06318 Selenicereus undatus HOM05D006149 ORTHO05D007341 2.1e-16 89.4 91 54.9
Thecc.02G107700 Theobroma cacao HOM05D006149 ORTHO05D007341 2.1e-16 89.4 89 58.4
Ciclev10029393m.g Citrus clementina HOM05D006149 ORTHO05D007341 2.7e-16 89.0 89 56.2
Oeu017469.1 Olea europaea HOM05D006149 ORTHO05D007341 2.7e-16 89.0 88 61.4
CARHR105640 Cardamine hirsuta HOM05D006149 ORTHO05D007341 3.6e-16 88.6 89 58.4
Lalb_Chr21g0308351 Lupinus albus HOM05D006149 ORTHO05D007341 6.1e-16 87.8 91 57.1
QL11p033743 Quercus lobata HOM05D006149 ORTHO05D007341 8.0e-16 87.4 66 65.2
FAN20G0990 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.0e-15 87.0 79 62.0
ECA240G2462 Erigeron canadensis HOM05D006149 ORTHO05D007341 1.4e-15 86.7 94 52.1
THA.LOC104807242 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 1.4e-15 86.7 55 76.4
AL3G46990 Arabidopsis lyrata HOM05D006149 ORTHO05D007341 1.8e-15 86.3 89 57.3
Sp3g28510 Schrenkiella parvula HOM05D006149 ORTHO05D007341 1.8e-15 86.3 89 57.3
BcaB03g16271 Brassica carinata HOM05D006149 ORTHO05D007341 2.3e-15 85.9 89 57.3
Haze_10168 Corylus avellana HOM05D006149 ORTHO05D007341 2.3e-15 85.9 57 75.4
Cfa004575 Carpinus fangiana HOM05D006149 ORTHO05D007341 3.0e-15 85.5 57 73.7
Thhalv10022867m.g Eutrema salsugineum HOM05D006149 ORTHO05D007341 4.0e-15 85.1 89 56.2
ClCG05G010280 Citrullus lanatus HOM05D006149 ORTHO05D007341 5.2e-15 84.7 89 56.2
Sed0001717 Sechium edule HOM05D006149 ORTHO05D007341 5.2e-15 84.7 93 57.0
CANSAT25G3711 Cannabis sativa HOM05D006149 ORTHO05D007341 6.8e-15 84.3 79 58.2
ATR0618G054 Amborella trichopoda HOM05D006149 ORTHO05D007341 8.8e-15 84.0 80 60.0
Aa31LG8G13110 Aethionema arabicum HOM05D006149 ORTHO05D007341 1.2e-14 83.6 95 54.7
MELO3C019546.2 Cucumis melo HOM05D006149 ORTHO05D007341 1.2e-14 83.6 89 55.1
CsaV3_3G018210 Cucumis sativus L. HOM05D006149 ORTHO05D007341 1.2e-14 83.6 89 55.1
BcaB08g34585 Brassica carinata HOM05D006149 ORTHO05D007341 2.6e-14 82.4 89 55.1
CDE02G4185 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.6e-14 82.4 86 55.8
MBI12_g27878_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 2.6e-14 82.4 94 55.3
CDE02G2507 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 3.4e-14 82.0 86 55.8
FvH4_2g05220 Fragaria vesca HOM05D006149 ORTHO05D007341 1.7e-13 79.7 89 55.1
FAN15G1894 Fragaria x ananassa HOM05D006149 ORTHO05D007341 1.7e-13 79.7 89 55.1
FAN24G0478 Fragaria x ananassa HOM05D000289 ORTHO05D007341 1.7e-13 79.7 89 55.1
Sed0008540 Sechium edule HOM05D006149 ORTHO05D007341 1.7e-13 79.7 90 54.4
CDE04G1609 Ceratophyllum demersum HOM05D006149 ORTHO05D007341 2.2e-13 79.3 87 55.2
Aqoxy3G02908 Aquilegia oxysepala HOM05D006149 ORTHO05D007341 4.8e-13 78.2 96 51.0
FAN27G1351 Fragaria x ananassa HOM05D000289 ORTHO05D007341 4.8e-13 78.2 89 53.9
A07p05350 Brassica napus HOM05D006149 ORTHO05D007341 6.3e-13 77.8 89 52.8
BraA07t28328Z Brassica rapa HOM05D006149 ORTHO05D007341 6.3e-13 77.8 89 52.8
SHI05287 Sapria himalayana HOM05D006149 ORTHO05D007341 6.3e-13 77.8 89 52.8
Zm00001eb393310 Zea mays HOM05D006149 ORTHO05D007341 6.3e-13 77.8 89 51.7
Os09g0104300 Oryza sativa ssp. japonica HOM05D006149 ORTHO05D007341 2.4e-12 75.9 75 57.3
Pp3c2_21780 Physcomitrium patens HOM05D006149 ORTHO05D007341 5.4e-12 74.7 60 65.0
HPP92_004777 Vanilla planifolia HOM05D006149 ORTHO05D007341 5.4e-12 74.7 82 56.1
Zm00001eb020500 Zea mays HOM05D006149 ORTHO05D007341 5.4e-12 74.7 89 50.6
THA.LOC104819555 Tarenaya hassleriana HOM05D006149 ORTHO05D007341 5.9e-11 71.2 36 94.4
SMO197G0096 Selaginella moellendorffii HOM05D024641 ORTHO05D007341 7.7e-11 70.9 60 66.7
SMO364G0740 Selaginella moellendorffii HOM05D006149 ORTHO05D007341 7.7e-11 70.9 60 66.7
Mapoly0056s0071 Marchantia polymorpha HOM05D006149 ORTHO05D007341 2.3e-10 69.3 83 49.4
Pp3c1_15220 Physcomitrium patens HOM05D006149 ORTHO05D007341 2.3e-10 69.3 60 61.7
CANSAT25G0333 Cannabis sativa HOM05D006149 ORTHO05D007341 2.9e-10 68.9 36 88.9
SEGI_00829 Sequoiadendron giganteum HOM05D006149 ORTHO05D007341 5.0e-10 68.2 79 51.9
AagrBONN_evm.TU.Sc2ySwM_228.2976 Anthoceros agrestis HOM05D006149 ORTHO05D007341 1.9e-09 66.2 37 83.8
CBR_g44544 Chara braunii HOM05D006149 ORTHO05D007341 3.3e-09 65.5 39 79.5
Lsat_1_v5_gn_5_63380 Lactuca sativa HOM05D000113 ORTHO05D012184 9.5e-09 63.9 48 64.6
MBI03_g28533_MAGBIO Magnolia biondii HOM05D006149 ORTHO05D007341 9.5e-09 63.9 85 49.4
Ciclev10006213m.g Citrus clementina HOM05D006149 ORTHO05D007341 1.6e-08 63.2 90 43.3
EL10Ac9g22279 Beta vulgaris HOM05D006149 ORTHO05D007341 6.1e-08 61.2 75 49.3
Duzib248G1531 Durio zibethinus HOM05D006149 ORTHO05D007341 1.4e-07 60.1 89 50.6


User provided reference genes

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