Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.3e-84 314.3 159 100.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 3.1e-60 235.3 161 75.8
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.3e-57 225.3 161 74.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.2e-57 224.9 161 70.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.2e-56 223.4 161 68.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.8e-55 219.5 161 67.7
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.3e-55 219.2 158 73.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 4.0e-55 218.4 161 70.2
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 6.8e-55 217.6 158 68.4
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.4e-54 214.9 161 68.3
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.4e-52 209.9 161 68.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.1e-52 208.4 158 67.7
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 5.4e-52 208.0 161 64.6
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.3e-50 203.4 160 66.9
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 3.9e-50 201.8 161 67.7
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 8.6e-50 200.7 166 62.0
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.5e-49 199.9 161 62.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 4.3e-49 198.4 161 64.6
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 7.3e-49 197.6 161 63.4
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 7.3e-49 197.6 162 66.0
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.7e-48 194.9 161 64.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 6.2e-48 194.5 162 64.2
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.0e-47 193.7 162 64.2
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-47 193.7 157 66.9
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.8e-47 193.0 167 60.5
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.3e-47 192.6 164 62.2
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 5.2e-47 191.4 158 63.9
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 8.9e-47 190.7 162 61.7
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.9e-47 190.7 158 63.3
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.2e-46 190.3 159 62.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-46 190.3 156 63.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-46 189.9 159 62.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.5e-46 189.9 167 60.5
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.0e-46 189.5 158 63.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.6e-46 189.1 163 60.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 4.4e-46 188.3 162 59.9
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.7e-45 186.4 160 60.6
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.2e-45 186.0 168 58.3
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.2e-45 186.0 166 59.6
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 2.2e-45 186.0 158 62.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 3.7e-45 185.3 159 61.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 4.9e-45 184.9 171 57.9
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 8.3e-45 184.1 163 58.3
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.1e-44 183.7 160 62.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.9e-44 183.0 171 57.3
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.9e-44 183.0 160 62.5
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.2e-44 182.2 160 62.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 4.1e-44 181.8 166 59.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 5.4e-44 181.4 154 58.4
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.4e-44 181.4 160 61.9
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 7.0e-44 181.0 151 60.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 7.0e-44 181.0 131 70.2
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 9.2e-44 180.6 160 61.2
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.2e-43 180.3 160 61.9
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.2e-43 180.3 120 72.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.0e-43 179.5 158 58.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.7e-43 179.1 162 59.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 4.6e-43 178.3 162 57.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 6.0e-43 177.9 163 57.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 6.0e-43 177.9 160 58.8
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.0e-42 177.2 156 59.0
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.0e-42 177.2 160 57.5
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.0e-42 177.2 163 56.4
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.3e-42 176.8 174 55.7
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.7e-42 176.4 164 56.1
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.7e-42 176.4 157 57.3
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.7e-42 176.4 163 56.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.7e-42 176.4 160 61.2
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.7e-42 176.4 110 73.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 2.3e-42 176.0 160 60.0
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 3.9e-42 175.3 126 65.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 5.0e-42 174.9 169 56.2
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.6e-42 174.5 158 56.3
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 6.6e-42 174.5 159 56.0
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 8.6e-42 174.1 149 61.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.1e-41 173.7 199 50.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.1e-41 173.7 159 59.7
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.5e-41 173.3 159 57.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.5e-41 173.3 160 58.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.5e-41 173.3 168 55.4
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.5e-41 172.6 160 58.1
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 2.5e-41 172.6 164 58.5
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.5e-41 172.6 135 63.7
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-41 172.6 164 57.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.3e-41 172.2 158 56.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 4.3e-41 171.8 158 55.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 5.6e-41 171.4 154 57.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 7.3e-41 171.0 157 56.7
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 9.5e-41 170.6 159 57.9
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.6e-40 169.9 115 71.3
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.6e-40 169.9 160 56.9
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.8e-40 169.1 158 55.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.7e-40 168.3 163 56.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 4.7e-40 168.3 158 53.8
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.2e-40 167.9 160 56.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.1e-39 167.2 129 64.3
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.1e-39 167.2 163 55.8
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.4e-39 166.8 156 56.4
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.4e-39 166.8 172 52.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.1e-39 165.6 161 55.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.1e-39 165.6 200 49.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 4.0e-39 165.2 108 70.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 4.0e-39 165.2 154 54.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 6.8e-39 164.5 163 54.6
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.2e-38 163.7 122 65.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.5e-38 163.3 228 43.9
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 2.6e-38 162.5 169 53.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 2.6e-38 162.5 158 55.7
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 2.6e-38 162.5 160 55.0
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 4.4e-38 161.8 161 54.0
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 7.5e-38 161.0 166 53.6
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.3e-37 160.2 157 56.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.2e-37 159.5 145 55.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.9e-37 159.1 161 54.7
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 3.7e-37 158.7 115 63.5
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 6.4e-37 157.9 105 67.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.4e-36 156.8 157 52.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.2e-36 155.6 149 55.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 5.4e-36 154.8 253 39.9
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 7.8e-35 151.0 160 51.2
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.0e-34 149.1 110 65.5
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.3e-33 145.2 129 61.2
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.1e-32 142.9 149 52.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-31 140.6 104 67.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 7.6e-30 134.4 94 62.8
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.1e-28 128.6 128 54.7
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.6e-27 126.7 164 42.1
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.6e-27 126.7 98 56.1
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 2.1e-27 126.3 100 56.0
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.7e-24 115.2 107 55.1
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.9e-21 105.1 63 73.0
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-19 100.5 63 76.2
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.0e-18 97.4 137 42.3
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.9e-18 95.5 60 70.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.1e-17 94.0 63 71.4
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 4.3e-17 92.0 63 65.1
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.2e-14 84.0 84 45.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.6e-14 82.8 90 41.1
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-12 76.3 46 69.6
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.2e-12 75.5 90 53.3
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 5.4e-12 75.1 48 64.6
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 8.7e-10 67.8 58 55.2
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.1e-09 67.4 42 64.3
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 5.8e-06 55.1 35 62.9


User provided reference genes

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