Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1226.8 626 100.0
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.1e-297 1024.6 541 97.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.9e-278 962.2 612 84.0
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-247 860.1 565 82.7
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.6e-245 852.8 616 74.8
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.1e-244 848.6 620 73.2
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.9e-242 842.0 610 72.8
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 5.5e-241 837.8 582 75.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.9e-239 831.6 652 70.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 7.4e-238 827.4 619 71.9
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 7.6e-235 817.4 572 74.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 4.3e-230 801.6 607 70.7
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 6.5e-226 787.7 610 69.5
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.9e-225 786.2 612 68.8
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.7e-224 782.3 619 69.8
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 6.1e-224 781.2 570 71.1
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.5e-222 775.8 571 70.9
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.1e-220 770.4 610 68.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 5.3e-220 768.1 570 70.4
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.5e-219 766.5 608 67.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.0e-218 763.8 607 66.7
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 1.0e-218 763.8 571 69.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 8.5e-218 760.8 567 69.0
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.4e-217 760.0 570 70.0
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 2.5e-217 759.2 610 67.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 9.4e-217 757.3 569 69.4
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 2.1e-216 756.1 621 66.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.6e-216 755.4 570 69.5
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 6.1e-216 754.6 569 69.6
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.0e-215 753.8 569 70.1
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 3.9e-215 751.9 610 66.7
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.1e-215 751.5 570 68.6
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 2.5e-214 749.2 568 69.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.4e-214 747.7 569 68.7
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 9.7e-214 747.3 571 69.0
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.7e-213 745.3 535 72.7
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 6.3e-213 744.6 566 68.9
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 8.2e-213 744.2 570 69.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 8.2e-213 744.2 648 62.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 1.1e-212 743.8 568 68.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.4e-212 742.7 566 69.6
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.3e-212 741.5 568 68.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.6e-211 739.2 568 68.5
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.5e-211 738.4 571 68.5
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.7e-211 737.6 569 68.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.0e-210 737.3 608 65.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 2.9e-210 735.7 570 68.1
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 3.8e-210 735.3 614 66.3
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 5.0e-210 734.9 633 62.9
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 6.5e-210 734.6 571 68.3
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 4.2e-209 731.9 609 64.9
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 7.2e-209 731.1 534 70.8
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 1.6e-208 729.9 568 68.3
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.3e-205 720.3 569 68.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.8e-205 719.2 571 65.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 8.2e-205 717.6 636 62.6
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 3.1e-204 715.7 563 67.7
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 4.1e-204 715.3 570 67.5
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 9.1e-204 714.1 535 69.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.0e-203 713.0 605 62.8
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.3e-202 710.3 578 65.9
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 2.2e-202 709.5 572 66.1
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 2.2e-202 709.5 646 60.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 2.9e-202 709.1 572 64.9
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 6.5e-202 708.0 569 64.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 8.5e-202 707.6 567 67.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 1.1e-201 707.2 572 65.7
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.1e-201 707.2 569 65.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.5e-201 706.8 566 66.1
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.9e-201 706.4 513 71.5
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.9e-201 706.4 605 64.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-201 706.1 569 65.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 4.2e-201 705.3 617 62.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 5.5e-201 704.9 612 61.8
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-200 703.7 572 64.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.6e-200 703.4 569 63.6
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.1e-200 703.0 536 69.4
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.1e-200 703.0 569 64.1
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.6e-200 702.2 646 60.1
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 3.6e-200 702.2 569 63.4
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 8.0e-200 701.0 570 64.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.0e-199 700.7 572 65.4
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 2.3e-199 699.5 647 59.8
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 4.0e-199 698.7 565 66.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 5.2e-199 698.4 565 64.4
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.7e-197 692.2 573 62.8
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 1.4e-196 690.3 622 60.9
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 2.4e-196 689.5 576 64.2
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 2.4e-196 689.5 571 63.6
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 1.0e-194 684.1 566 63.1
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.9e-194 682.6 567 64.7
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.1e-192 676.4 606 60.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.7e-192 676.0 610 60.3
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.6e-192 675.6 574 62.4
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 8.0e-192 674.5 571 63.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.0e-191 674.1 571 63.2
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 4.0e-191 672.2 571 63.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.2e-190 670.6 572 61.9
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.4e-190 669.1 638 58.6
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.4e-190 669.1 573 62.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.7e-190 668.3 612 59.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 2.4e-188 662.9 576 62.0
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 9.1e-188 661.0 575 61.4
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.0e-187 659.8 623 59.6
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.5e-187 659.1 570 61.1
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.7e-186 656.8 621 59.4
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 4.2e-185 652.1 573 62.8
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 9.5e-185 651.0 608 58.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-184 650.6 623 57.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 5.2e-183 645.2 568 60.4
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.8e-183 644.8 572 61.5
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.0e-182 643.3 532 67.9
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 3.4e-182 642.5 580 62.2
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.8e-180 636.7 625 57.9
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 5.4e-180 635.2 609 58.8
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.0e-178 630.9 540 62.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 9.5e-177 624.4 569 59.4
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.8e-176 622.9 611 57.1
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 6.8e-167 591.7 572 58.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 6.8e-167 591.7 614 55.0
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 3.9e-162 575.9 488 65.2
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 8.6e-162 574.7 506 61.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 3.3e-161 572.8 607 52.4
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 6.2e-160 568.5 567 56.6
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.4e-156 556.6 570 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 1.6e-155 553.9 537 55.3
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 5.2e-151 538.9 582 54.3
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.5e-142 510.8 589 51.1
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.1e-129 468.0 607 48.3
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.4e-127 461.1 584 46.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 3.4e-126 456.4 391 62.1
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.9e-117 426.0 306 71.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.8e-106 391.0 449 52.3
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 3.9e-106 389.8 698 38.5
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.3e-105 386.7 271 77.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.2e-100 370.2 277 73.6
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.3e-66 257.7 473 35.7
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 5.2e-50 203.4 222 52.3
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.2e-41 175.6 574 30.5
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 7.5e-41 172.9 196 52.0
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.2e-39 166.0 165 55.2
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-37 162.2 203 48.8
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 8.6e-37 159.5 151 58.9
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.5e-36 158.7 114 66.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 9.5e-36 156.0 148 58.1
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-31 142.5 182 47.8
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 1.6e-30 138.7 184 43.5
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.6e-28 130.2 168 48.8
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 6.2e-27 126.7 128 57.8
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 9.0e-26 122.9 121 55.4
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 6.6e-21 106.7 322 30.4
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 2.4e-18 98.2 88 58.0
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.4e-15 89.0 85 52.9
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 5.4e-15 87.0 58 72.4
CSS0001094 Camellia sinensis var. sinensis HOM05D000532 ORTHO05D002745 1.6e-11 75.5 45 86.7
CSS0046681 Camellia sinensis var. sinensis HOM05D000532 ORTHO05D002745 1.6e-11 75.5 45 86.7
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-11 75.5 63 60.3
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 9.9e-09 66.2 37 83.8
Dinv28105 Davidia involucrata HOM05D000532 ORTHO05D002745 7.1e-07 60.1 43 72.1
vmacro17714 Vaccinium macrocarpon HOM05D000532 ORTHO05D002745 1.6e-06 58.9 44 70.5
Hma1.2p1_0653F.1_g196280 Hydrangea macrophylla HOM05D000532 ORTHO05D002745 3.5e-06 57.8 45 66.7


User provided reference genes

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