Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.5e-56 221.9 111 100.0
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 6.2e-39 164.1 102 83.3
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 1.2e-29 133.3 97 73.2
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 4.5e-29 131.3 97 69.1
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 4.5e-29 131.3 97 70.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.9e-28 127.9 115 61.7
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 4.9e-28 127.9 97 66.0
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 1.4e-27 126.3 97 64.9
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 4.2e-27 124.8 102 62.7
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 5.5e-27 124.4 102 63.7
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 9.3e-27 123.6 97 64.9
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 1.2e-26 123.2 97 64.9
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.6e-26 122.9 121 57.0
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 2.1e-26 122.5 97 66.0
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 3.5e-26 121.7 97 64.9
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 4.6e-26 121.3 97 67.0
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 7.9e-26 120.6 97 68.0
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.8e-25 119.4 102 57.8
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.9e-25 118.2 97 61.9
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 6.7e-25 117.5 97 61.9
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 6.7e-25 117.5 102 58.8
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 8.7e-25 117.1 109 60.6
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.1e-24 116.7 102 58.8
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 1.1e-24 116.7 97 59.8
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.1e-24 116.7 97 62.9
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.5e-24 116.3 97 61.9
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.5e-24 116.3 97 60.8
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 1.9e-24 115.9 97 62.9
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.9e-24 115.9 97 60.8
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 1.9e-24 115.9 102 59.8
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 2.5e-24 115.5 97 58.8
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 2.5e-24 115.5 97 62.9
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 4.3e-24 114.8 102 56.9
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 5.6e-24 114.4 97 57.7
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 5.6e-24 114.4 102 58.8
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 7.4e-24 114.0 102 57.8
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 2.8e-23 112.1 97 59.8
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 2.8e-23 112.1 97 56.7
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.8e-23 112.1 102 57.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 1.4e-22 109.8 97 57.7
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.8e-22 109.4 96 59.4
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.8e-22 109.4 103 57.3
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 2.4e-22 109.0 97 58.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 2.4e-22 109.0 97 54.6
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 3.1e-22 108.6 128 49.2
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.1e-22 108.6 97 57.7
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 4.0e-22 108.2 102 56.9
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.3e-22 107.8 97 57.7
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 9.0e-22 107.1 98 60.2
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 9.0e-22 107.1 102 56.9
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.2e-21 106.7 97 56.7
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 1.2e-21 106.7 77 70.1
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 1.2e-21 106.7 97 57.7
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.5e-21 106.3 98 58.2
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 2.0e-21 105.9 102 54.9
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.0e-21 105.9 97 56.7
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 2.0e-21 105.9 96 55.2
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 2.0e-21 105.9 97 55.7
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.0e-21 105.9 97 55.7
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 2.6e-21 105.5 102 55.9
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 2.6e-21 105.5 97 57.7
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 3.4e-21 105.1 102 53.9
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.5e-21 104.8 102 53.9
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 4.5e-21 104.8 102 53.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 5.8e-21 104.4 102 54.9
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 5.8e-21 104.4 102 54.9
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 7.6e-21 104.0 102 55.9
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 7.6e-21 104.0 102 55.9
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 7.6e-21 104.0 102 54.9
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 1.0e-20 103.6 96 57.3
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.3e-20 103.2 102 53.9
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 1.3e-20 103.2 102 53.9
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.3e-20 103.2 97 54.6
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 52.0
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 52.9
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 52.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 52.9
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 52.9
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 1.7e-20 102.8 102 53.9
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 2.2e-20 102.4 97 54.6
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 2.9e-20 102.1 102 52.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.9e-20 102.1 97 54.6
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 3.8e-20 101.7 102 52.0
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 4.9e-20 101.3 97 54.6
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.9e-20 101.3 102 54.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 4.9e-20 101.3 103 54.4
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 6.5e-20 100.9 102 52.9
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.5e-20 100.9 102 52.9
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 6.5e-20 100.9 87 60.9
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 6.5e-20 100.9 103 54.4
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 8.4e-20 100.5 104 51.9
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 8.4e-20 100.5 102 52.0
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 1.1e-19 100.1 104 51.9
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.4e-19 99.8 97 55.7
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 1.4e-19 99.8 102 53.9
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.9e-19 99.4 97 53.6
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.9e-19 99.4 97 53.6
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.5e-19 99.0 96 54.2
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.5e-19 99.0 96 54.2
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.2e-19 98.6 71 69.0
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 4.2e-19 98.2 97 52.6
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.5e-19 97.8 92 55.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 2.7e-18 95.5 98 52.0
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.0e-17 93.6 104 50.0
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.8e-17 92.8 102 50.0
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 3.0e-17 92.0 102 47.1
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 6.7e-17 90.9 102 50.0
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.9e-16 89.4 102 48.0
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.5e-16 89.0 102 45.1
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 3.3e-16 88.6 97 49.5
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 5.7e-16 87.8 102 44.1
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 5.7e-16 87.8 105 45.7
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 2.2e-15 85.9 97 49.5
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 6.3e-15 84.3 97 51.5
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.3e-12 76.6 66 54.5
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.4e-11 73.2 91 48.4
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 3.2e-11 72.0 69 58.0
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 5.1e-09 64.7 67 46.3
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.7e-07 59.7 67 49.3
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 2.2e-07 59.3 68 44.1
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.8e-07 58.2 73 43.8
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 4.8e-07 58.2 54 59.3
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 1.4e-06 56.6 59 47.5
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.4e-06 56.6 37 70.3


User provided reference genes

Program Settings