Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.4e-262 909.1 439 100.0
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 9.7e-237 823.2 439 89.1
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.7e-234 815.1 439 88.2
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 8.5e-233 810.1 439 88.2
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 7.2e-232 807.0 437 87.0
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 6.8e-230 800.4 439 86.8
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.6e-229 798.5 439 85.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.5e-229 797.0 439 86.3
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 3.7e-228 794.7 439 86.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.4e-227 792.0 451 83.8
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.4e-227 792.0 436 85.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 5.4e-227 790.8 436 85.3
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 5.4e-227 790.8 435 86.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 3.5e-226 788.1 437 85.8
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.5e-226 787.7 434 85.5
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 5.9e-226 787.3 435 85.3
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 5.9e-226 787.3 437 84.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.3e-225 786.2 437 84.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.9e-224 782.3 437 84.7
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.5e-224 781.9 437 84.0
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 3.3e-224 781.6 437 84.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.2e-224 780.4 436 83.9
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 1.2e-223 779.6 437 84.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.1e-223 778.9 437 83.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 6.1e-223 777.3 439 83.1
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.1e-223 777.3 497 76.9
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.8e-222 775.8 439 83.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.2e-221 773.1 439 83.4
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.6e-221 771.9 435 83.4
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.4e-221 771.5 437 83.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 4.4e-221 771.2 437 83.5
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.7e-221 770.8 428 85.3
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 1.3e-220 769.6 438 81.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 2.8e-220 768.5 437 82.2
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 6.3e-220 767.3 439 81.8
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 6.3e-220 767.3 439 81.1
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 6.3e-220 767.3 441 81.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.1e-219 766.5 439 82.2
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.8e-219 765.8 434 82.5
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.8e-219 765.8 434 82.5
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.8e-219 765.8 433 82.2
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 1.8e-219 765.8 435 81.8
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.1e-219 764.6 435 83.7
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.4e-219 764.2 433 82.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-218 762.7 433 82.2
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.6e-218 762.7 433 83.1
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.0e-218 762.3 439 80.6
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.5e-218 761.1 433 81.8
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 4.5e-218 761.1 436 81.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 7.8e-218 760.4 439 80.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.0e-217 760.0 437 81.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.0e-217 760.0 473 77.2
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.6e-217 756.9 439 80.4
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.5e-216 755.4 430 81.6
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.3e-216 753.8 430 81.2
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-216 753.8 445 80.4
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 9.5e-216 753.4 437 81.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 9.5e-216 753.4 439 81.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 1.2e-215 753.1 420 85.5
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.6e-215 752.7 436 80.7
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.8e-215 751.9 508 73.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.8e-215 751.9 412 87.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.6e-215 751.5 434 80.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 3.6e-215 751.5 437 80.5
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 8.0e-215 750.4 434 80.6
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 8.0e-215 750.4 434 80.6
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.8e-214 749.2 437 80.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.3e-214 748.8 429 81.6
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 5.2e-214 747.7 434 80.4
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.2e-214 747.7 439 80.4
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 6.8e-214 747.3 439 79.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 2.0e-213 745.7 429 80.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.0e-213 745.7 433 81.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 5.8e-213 744.2 439 79.7
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 7.5e-213 743.8 434 80.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 7.5e-213 743.8 436 79.6
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 7.5e-213 743.8 439 79.3
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 9.8e-213 743.4 436 79.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.7e-212 742.7 437 80.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 8.3e-212 740.3 445 78.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 1.4e-211 739.6 436 79.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.4e-211 738.8 444 78.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.7e-210 735.3 435 78.9
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.7e-209 732.6 439 77.4
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.7e-209 732.6 440 78.4
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 4.0e-206 721.5 391 88.2
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 5.2e-206 721.1 523 68.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.7e-204 714.9 402 83.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 4.9e-204 714.5 434 78.3
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.1e-203 713.4 408 83.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.4e-203 712.2 407 82.3
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.2e-202 709.9 436 77.5
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 7.3e-200 700.7 435 77.2
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.2e-194 683.3 434 75.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.9e-193 678.3 437 75.5
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.3e-192 675.2 428 74.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 2.0e-189 666.0 434 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 3.8e-188 661.8 426 73.5
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 4.9e-188 661.4 439 71.3
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 4.9e-188 661.4 439 69.5
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.3e-185 652.5 441 69.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 6.2e-183 644.4 436 73.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-181 640.2 439 67.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 2.4e-179 632.5 427 69.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.9e-177 625.2 342 85.7
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-176 623.2 338 86.4
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.5e-176 623.2 427 69.3
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 1.5e-176 623.2 341 85.3
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.2e-175 617.8 440 72.3
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.6e-173 612.5 433 65.8
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.7e-172 609.8 339 84.4
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 7.9e-170 600.9 438 64.4
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.0e-169 600.5 390 74.9
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 6.4e-164 581.3 355 78.0
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.7e-162 575.9 432 62.3
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.9e-162 574.3 443 61.2
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.9e-161 572.0 443 60.7
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.4e-155 553.5 439 61.3
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 7.1e-155 551.2 426 59.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-149 533.5 296 85.5
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.2e-147 525.8 431 58.9
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 6.7e-145 518.1 337 72.1
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.7e-143 513.5 351 69.2
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-131 473.4 381 63.3
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 4.2e-131 472.2 432 53.0
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 9.1e-110 401.4 224 84.8
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 7.7e-109 398.3 352 58.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 4.0e-105 386.0 243 74.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.9e-95 352.4 239 70.3
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-78 296.6 192 70.8
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-75 288.1 176 76.1
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.3e-75 285.4 157 86.6
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 1.9e-70 270.8 145 88.3
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.7e-68 264.2 197 68.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.6e-61 241.1 134 85.1
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.6e-61 239.6 235 57.9
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.6e-53 213.0 113 86.7
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.8e-48 196.1 107 81.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-41 174.5 137 63.5
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.1e-36 156.4 88 83.0
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 8.2e-34 149.1 165 50.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 2.0e-32 144.4 204 39.7
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 6.5e-31 139.4 93 69.9
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 9.4e-30 135.6 82 79.3
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.6e-29 134.8 87 81.6
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.7e-23 114.8 246 33.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-23 114.0 67 71.6
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 9.4e-22 109.0 57 80.7
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 3.0e-20 104.0 72 62.5
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.1e-17 94.0 63 71.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 7.0e-17 92.8 129 43.4
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-13 81.6 36 91.7
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 4.7e-13 80.1 38 86.8
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 6.3e-10 69.7 35 88.6
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.1e-09 67.4 36 77.8
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.3e-07 62.0 69 52.2
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 1.5e-06 58.5 35 74.3


User provided reference genes

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