Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.1e-41 172.9 92 100.0
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.2e-17 91.3 95 64.2
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.2e-15 84.3 96 56.2
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.4e-14 81.6 96 55.2
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.4e-14 81.3 96 53.1
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.8e-13 78.6 88 52.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.8e-13 78.6 97 52.6
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.4e-12 75.5 98 56.1
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.7e-11 72.0 75 61.3
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.5e-11 71.2 99 50.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 4.5e-11 71.2 99 50.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 4.5e-11 71.2 99 50.5
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 4.5e-11 71.2 98 54.1
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.9e-11 70.9 96 52.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.9e-11 70.9 92 52.2
Actinidia12585 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.0e-10 70.1 78 52.6
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 6.6e-10 67.4 99 49.5
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 8.6e-10 67.0 96 49.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 1.1e-09 66.6 98 50.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 1.1e-09 66.6 78 61.5
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.9e-09 65.9 101 47.5
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.5e-09 65.5 95 42.1
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.3e-09 64.7 97 47.4
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 5.6e-09 64.3 90 50.0
Gohir.D01G039700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.6e-09 64.3 92 42.4
Gorai.002G049200 Gossypium raimondii HOM05D008890 ORTHO05D004248 5.6e-09 64.3 92 42.4
Gohir.D01G039900 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.3e-09 63.9 92 41.3
Gorai.002G049500 Gossypium raimondii HOM05D008890 ORTHO05D004248 7.3e-09 63.9 92 41.3
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 9.5e-09 63.5 98 49.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.2e-08 63.2 100 50.0
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 1.6e-08 62.8 77 59.7
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.6e-08 62.8 98 44.9
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.1e-08 62.4 96 43.8
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 3.6e-08 61.6 95 45.3
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 3.6e-08 61.6 95 46.3
Gohir.A01G049500 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.6e-08 61.6 97 45.4
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.7e-08 61.2 96 45.8
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.1e-08 60.8 97 44.3
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.1e-08 60.8 97 44.3
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 6.1e-08 60.8 97 46.4
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 6.1e-08 60.8 99 42.4
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.0e-08 60.5 96 42.7
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.0e-07 60.1 93 47.3
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-07 60.1 97 43.3
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 1.0e-07 60.1 97 43.3
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.0e-07 60.1 104 48.1
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.0e-07 60.1 108 44.4
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 1.0e-07 60.1 95 44.2
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.0e-07 60.1 87 48.3
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.4e-07 59.7 102 46.1
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.4e-07 59.7 102 46.1
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.8e-07 59.3 102 46.1
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 1.8e-07 59.3 102 45.1
COL.COLO4_17492 Corchorus olitorius HOM05D008890 ORTHO05D004248 2.3e-07 58.9 97 44.3
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.3e-07 58.9 96 42.7
Gohir.A01G049700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.3e-07 58.9 97 45.4
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 3.0e-07 58.5 102 45.1
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.0e-07 58.5 93 51.6
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.0e-07 58.5 99 45.5
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 3.0e-07 58.5 87 49.4
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.0e-07 58.2 96 42.7
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 4.0e-07 58.2 96 47.9
Thecc.07G128000 Theobroma cacao HOM05D008890 ORTHO05D004248 4.0e-07 58.2 95 42.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 5.2e-07 57.8 61 62.3
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.2e-07 57.8 102 45.1
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.2e-07 57.8 68 60.3
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 5.2e-07 57.8 105 43.8
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 8.9e-07 57.0 102 41.2
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.2e-06 56.6 102 43.1
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 2.0e-06 55.8 100 42.0
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 2.0e-06 55.8 100 42.0
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 2.0e-06 55.8 100 42.0
Gohir.A01G049100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.6e-06 55.5 92 39.1
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 3.4e-06 55.1 100 42.0
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 4.4e-06 54.7 100 42.0
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 4.4e-06 54.7 102 48.0
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.4e-06 54.7 95 40.0
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 4.4e-06 54.7 95 40.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.4e-06 54.7 86 46.5
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.7e-06 54.3 95 38.9
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 7.5e-06 53.9 96 39.6
Gohir.D01G040350 Gossypium hirsutum HOM05D008890 ORTHO05D004248 7.5e-06 53.9 96 39.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 9.8e-06 53.5 100 42.0
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 9.8e-06 53.5 84 48.8
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 9.8e-06 53.5 96 42.7
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 9.8e-06 53.5 88 44.3
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 9.8e-06 53.5 92 47.8


User provided reference genes

Program Settings