Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.5e-256 888.3 445 100.0
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 1.4e-254 882.5 445 99.6
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 1.9e-219 765.8 444 84.9
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 1.3e-212 743.0 442 84.2
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 3.4e-205 718.4 418 85.4
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.2e-194 683.3 441 76.0
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 4.5e-189 664.8 441 73.2
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 1.1e-187 660.2 442 72.9
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 2.5e-187 659.1 443 72.9
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 1.4e-185 653.3 488 67.8
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 3.3e-184 648.7 471 67.9
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 4.4e-184 648.3 443 72.5
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 8.2e-183 644.0 438 71.0
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.1e-182 643.7 435 71.7
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 3.1e-182 642.1 442 70.8
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.1e-182 641.7 435 71.7
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 4.5e-181 638.3 439 70.6
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 1.0e-180 637.1 439 69.5
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.7e-180 636.3 438 70.8
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 3.8e-180 635.2 441 69.8
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.1e-179 633.6 442 70.4
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 3.2e-179 632.1 443 69.3
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 8.8e-177 624.0 451 68.3
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 2.6e-176 622.5 451 68.1
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 4.4e-176 621.7 442 69.5
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 5.7e-176 621.3 443 70.0
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 7.4e-176 620.9 442 69.7
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.1e-174 617.1 468 66.2
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 1.1e-174 617.1 436 69.3
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 2.4e-174 615.9 435 69.7
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 4.1e-174 615.1 362 82.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 4.1e-174 615.1 434 68.2
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 1.2e-173 613.6 436 67.7
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 1.6e-173 613.2 441 67.3
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 1.6e-173 613.2 441 67.3
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 4.5e-173 611.7 438 68.3
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 4.5e-173 611.7 382 77.7
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 1.0e-172 610.5 509 62.1
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 1.7e-172 609.8 436 67.2
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 5.0e-172 608.2 466 65.5
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 5.0e-172 608.2 434 68.7
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 8.5e-172 607.4 434 68.4
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.7e-170 602.4 434 67.3
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.8e-169 599.7 468 64.5
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 4.0e-169 598.6 550 57.6
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 6.7e-169 597.8 443 66.1
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 8.8e-169 597.4 436 66.5
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 3.3e-168 595.5 435 66.7
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 4.4e-168 595.1 443 66.6
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.3e-167 593.6 436 66.5
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 4.8e-167 591.7 440 66.8
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 4.8e-167 591.7 442 67.0
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 1.8e-166 589.7 434 66.8
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 4.1e-166 588.6 568 55.5
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 9.1e-166 587.4 437 65.4
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 3.5e-165 585.5 437 65.9
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 3.5e-165 585.5 437 65.9
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 4.5e-165 585.1 468 60.7
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 1.7e-164 583.2 433 65.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 2.9e-164 582.4 437 65.9
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 3.8e-164 582.0 439 65.4
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.1e-163 580.5 433 68.6
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 1.9e-163 579.7 440 67.0
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 5.5e-163 578.2 437 65.7
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 1.2e-162 577.0 430 64.4
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.6e-162 576.6 387 72.4
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 2.1e-162 576.2 456 63.4
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 8.0e-162 574.3 470 62.6
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 1.2e-160 570.5 438 65.5
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 1.2e-160 570.5 447 63.8
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 7.5e-160 567.8 382 73.0
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 9.8e-160 567.4 439 63.6
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 1.3e-159 567.0 380 73.7
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 3.1e-158 562.4 439 63.3
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 1.5e-155 553.5 389 69.2
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 5.9e-149 531.6 412 65.0
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.0e-145 520.8 370 70.8
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 4.4e-144 515.4 441 58.5
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 4.4e-144 515.4 458 59.8
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.3e-140 503.8 429 58.5
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 3.1e-137 492.7 429 56.4
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 5.8e-136 488.4 324 75.9
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 1.4e-134 483.8 318 74.2
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 8.6e-132 474.6 408 60.5
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 5.6e-131 471.9 425 56.2
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 2.9e-127 459.5 384 61.5
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 2.9e-127 459.5 322 70.5
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 2.1e-117 426.8 427 50.8
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-115 421.0 293 69.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.9e-115 420.2 430 50.2
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 3.1e-113 412.9 430 48.1
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.9e-111 406.4 287 68.6
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 5.4e-110 402.1 313 64.2
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 2.7e-109 399.8 280 72.9
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 4.8e-106 389.0 431 46.9
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 3.4e-104 382.9 251 74.9
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 5.1e-92 342.4 371 49.3
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 6.5e-87 325.5 288 58.0
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 5.1e-68 262.7 183 71.0
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 2.2e-63 247.3 190 64.2
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.8e-60 237.7 286 47.6
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 1.3e-55 221.5 155 71.0
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 6.8e-52 209.1 307 41.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 1.2e-51 208.4 154 68.2
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.5e-51 208.0 332 38.6
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 4.1e-49 199.9 132 74.2
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 6.5e-47 192.6 149 65.1
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 6.8e-44 182.6 211 46.0
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 8.3e-42 175.6 155 60.6
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 2.3e-39 167.5 143 61.5
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.1e-37 159.5 122 63.9
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 8.9e-36 155.6 98 72.4
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 5.7e-35 152.9 93 72.0
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 3.9e-31 140.2 96 63.5
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 3.6e-29 133.7 92 71.7
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 1.2e-27 128.6 386 28.8
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 6.0e-16 89.7 154 34.4
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 1.6e-13 81.6 63 57.1
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 3.6e-13 80.5 50 68.0
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 3.6e-13 80.5 55 65.5
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 9.9e-11 72.4 70 48.6
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 9.9e-11 72.4 68 51.5
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 9.2e-09 65.9 69 46.4
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 9.2e-09 65.9 69 46.4
BraA03t09516Z Brassica rapa HOM05D001312 ORTHO05D008018 1.5e-06 58.5 58 48.3
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 5.6e-06 56.6 39 66.7


User provided reference genes

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