Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027892 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 1.8e-64 249.2 133 100.0
Rhsim01G0229500 Rhododendron simsii HOM05D004332 ORTHO05D005116 5.3e-61 237.7 133 90.2
Actinidia34413 Actinidia chinensis HOM05D004332 ORTHO05D005116 3.4e-60 235.0 133 90.2
Rhsim13G0081500 Rhododendron simsii HOM05D004332 ORTHO05D005116 2.2e-59 232.3 133 88.7
Actinidia37195 Actinidia chinensis HOM05D004332 ORTHO05D005116 6.5e-59 230.7 133 87.2
CSS0035025 Camellia sinensis var. sinensis HOM05D004332 ORTHO05D005116 8.5e-59 230.3 134 89.6
CiPaw.13G092600 Carya illinoinensis HOM05D004332 ORTHO05D005116 2.5e-58 228.8 133 85.7
Dinv17021 Davidia involucrata HOM05D004332 ORTHO05D005116 2.5e-58 228.8 133 88.0
Dinv42969 Davidia involucrata HOM05D004332 ORTHO05D005116 2.5e-58 228.8 133 88.0
Dinv43130 Davidia involucrata HOM05D004332 ORTHO05D005116 2.5e-58 228.8 133 88.0
Dinv04179 Davidia involucrata HOM05D004332 ORTHO05D005116 7.2e-58 227.3 133 86.5
TWI31G0816 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 7.9e-57 223.8 133 84.2
GSVIVG01024938001 Vitis vinifera HOM05D004332 ORTHO05D005116 7.9e-57 223.8 133 86.5
Prupe.6G074300 Prunus persica HOM05D004332 ORTHO05D005116 1.4e-56 223.0 133 83.5
CiPaw.14G067900 Carya illinoinensis HOM05D004332 ORTHO05D005116 1.8e-56 222.6 133 84.2
TAR633G2148 Trochodendron aralioides HOM05D004332 ORTHO05D005116 3.0e-56 221.9 133 82.7
COL.COLO4_18528 Corchorus olitorius HOM05D004332 ORTHO05D005116 3.9e-56 221.5 133 83.5
QL01p031517 Quercus lobata HOM05D004332 ORTHO05D005116 5.1e-56 221.1 132 82.6
Oeu017398.1 Olea europaea HOM05D004332 ORTHO05D005116 6.7e-56 220.7 133 82.0
Ciclev10029562m.g Citrus clementina HOM05D004332 ORTHO05D005116 1.1e-55 219.9 134 82.1
MD03G1090100 Malus domestica HOM05D004332 ORTHO05D005116 1.1e-55 219.9 133 82.0
Cc01_g13020 Coffea canephora HOM05D004332 ORTHO05D005116 1.5e-55 219.5 133 81.2
Thecc.09G319900 Theobroma cacao HOM05D004332 ORTHO05D005116 1.5e-55 219.5 133 82.7
Eucgr.J02045 Eucalyptus grandis HOM05D004332 ORTHO05D005116 2.5e-55 218.8 133 82.0
CANSAT54G0234 Cannabis sativa HOM05D004332 ORTHO05D005116 3.3e-55 218.4 133 81.2
Hma1.2p1_0615F.1_g189860 Hydrangea macrophylla HOM05D004332 ORTHO05D005116 4.3e-55 218.0 133 82.7
MD11G1099700 Malus domestica HOM05D004332 ORTHO05D005116 4.3e-55 218.0 134 81.3
Manes.01G172400 Manihot esculenta HOM05D004332 ORTHO05D005116 7.4e-55 217.2 133 81.2
Gohir.A05G094800 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.7e-55 216.9 133 82.0
Gohir.D05G095080 Gossypium hirsutum HOM05D004332 ORTHO05D005116 9.7e-55 216.9 133 82.0
TWI75G0441 Tripterygium wilfordii HOM05D004332 ORTHO05D005116 9.7e-55 216.9 133 82.0
Manes.02G131400 Manihot esculenta HOM05D004332 ORTHO05D005116 1.7e-54 216.1 133 82.7
Duzib150G0187 Durio zibethinus HOM05D004332 ORTHO05D005116 2.2e-54 215.7 133 82.0
Duzib168G2052 Durio zibethinus HOM05D004332 ORTHO05D005116 2.2e-54 215.7 133 82.0
Gohir.D05G095200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.2e-54 215.7 133 81.2
Gohir.D03G124100 Gossypium hirsutum HOM05D004332 ORTHO05D005116 2.8e-54 215.3 133 80.5
MBI05_g28381_MAGBIO Magnolia biondii HOM05D004332 ORTHO05D005116 6.3e-54 214.2 133 79.7
vmacro14542 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 6.3e-54 214.2 121 87.6
SGA_v2.0_scaffold132G34538 Striga asiatica HOM05D004332 ORTHO05D005116 8.2e-54 213.8 133 77.4
Carub.0008s2008 Capsella rubella HOM05D004332 ORTHO05D005116 1.4e-53 213.0 133 80.5
Gohir.A03G043200 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.4e-53 213.0 133 79.7
Gorai.009G098500 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.8e-53 212.6 133 81.2
Lsat_1_v5_gn_9_23661 Lactuca sativa HOM05D004332 ORTHO05D005116 1.8e-53 212.6 133 78.9
MELO3C025906.2 Cucumis melo HOM05D004332 ORTHO05D005116 2.4e-53 212.2 133 78.2
HanXRQChr08g0237001 Helianthus annuus HOM05D004332 ORTHO05D005116 2.4e-53 212.2 133 78.9
Potri.009G032100 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.4e-53 212.2 134 81.3
CsaV3_6G016760 Cucumis sativus L. HOM05D004332 ORTHO05D005116 3.1e-53 211.8 133 77.4
Gorai.003G130800 Gossypium raimondii HOM05D004332 ORTHO05D005116 4.1e-53 211.5 134 79.9
Oeu002423.1 Olea europaea HOM05D004332 ORTHO05D005116 4.1e-53 211.5 133 76.7
Migut.N00901 Erythranthe guttata HOM05D004332 ORTHO05D005116 9.1e-53 210.3 133 76.7
Nn2g11136 Nelumbo nucifera HOM05D004332 ORTHO05D005116 1.5e-52 209.5 133 78.2
Glyma.11G138900 Glycine max HOM05D004332 ORTHO05D005116 3.4e-52 208.4 133 78.2
AL8G35880 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 7.7e-52 207.2 133 78.2
Gohir.A07G099000 Gossypium hirsutum HOM05D004332 ORTHO05D005116 7.7e-52 207.2 133 79.7
ClCG02G020050 Citrullus lanatus HOM05D004332 ORTHO05D005116 1.0e-51 206.8 129 78.3
Glyma.12G062500 Glycine max HOM05D004332 ORTHO05D005116 1.0e-51 206.8 133 76.7
Sp6g21090 Schrenkiella parvula HOM05D004332 ORTHO05D005116 1.0e-51 206.8 133 77.4
AT5G59410 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 78.2
CARHR122250 Cardamine hirsuta HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 75.9
Oeu064111.2 Olea europaea HOM05D004332 ORTHO05D005116 1.3e-51 206.5 133 74.4
Thhalv10015001m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 1.7e-51 206.1 133 77.4
Gohir.D07G103500 Gossypium hirsutum HOM05D004332 ORTHO05D005116 1.7e-51 206.1 132 79.5
Lalb_Chr03g0026581 Lupinus albus HOM05D004332 ORTHO05D005116 1.7e-51 206.1 133 75.9
arahy.Tifrunner.gnm1.ann1.KAW7XL Arachis hypogaea HOM05D004332 ORTHO05D005116 2.2e-51 205.7 133 76.7
FAN16G1081 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.2e-51 205.7 129 77.5
FAN25G2250 Fragaria x ananassa HOM05D004332 ORTHO05D005116 2.9e-51 205.3 129 76.7
Potri.001G241500 Populus trichocarpa HOM05D004332 ORTHO05D005116 2.9e-51 205.3 133 83.5
SalBow2G0012 Salvia bowleyana HOM05D004332 ORTHO05D005116 2.9e-51 205.3 134 73.1
Sed0013921 Sechium edule HOM05D004332 ORTHO05D005116 2.9e-51 205.3 133 75.9
TPR.G34281 Trifolium pratense HOM05D004332 ORTHO05D005116 2.9e-51 205.3 133 77.4
FvH4_3g36490 Fragaria vesca HOM05D004332 ORTHO05D005116 3.8e-51 204.9 129 76.7
FAN11G3576 Fragaria x ananassa HOM05D004332 ORTHO05D005116 3.8e-51 204.9 129 76.7
unitig_6.g29275 Utricularia gibba HOM05D004332 ORTHO05D005116 3.8e-51 204.9 133 75.9
unitig_747.g21434 Utricularia gibba HOM05D004332 ORTHO05D005116 3.8e-51 204.9 133 75.9
Thhalv10017410m.g Eutrema salsugineum HOM05D004332 ORTHO05D005116 5.0e-51 204.5 133 75.2
A04p21990 Brassica napus HOM05D004332 ORTHO05D005116 6.5e-51 204.1 133 74.4
CARHR285780 Cardamine hirsuta HOM05D004332 ORTHO05D005116 6.5e-51 204.1 133 76.7
BraA04t17767Z Brassica rapa HOM05D004332 ORTHO05D005116 8.5e-51 203.8 133 73.7
ATR0559G209 Amborella trichopoda HOM05D004332 ORTHO05D005116 1.1e-50 203.4 133 76.7
PGR102G2585 Punica granatum HOM05D004332 ORTHO05D005116 1.4e-50 203.0 135 77.8
TAR636G3330 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.4e-50 203.0 122 83.6
Lalb_Chr19g0137881 Lupinus albus HOM05D004332 ORTHO05D005116 1.9e-50 202.6 133 75.2
AL146U10030 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 74.4
BcaC02g08120 Brassica carinata HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 72.9
C04p58150 Brassica napus HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 72.9
THA.LOC104814879 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.2e-50 201.8 133 75.2
BolC4t27343H Brassica oleracea HOM05D004332 ORTHO05D005116 4.2e-50 201.4 133 72.9
ClCG03G001410 Citrullus lanatus HOM05D004332 ORTHO05D005116 4.2e-50 201.4 133 74.4
BcaB06g28270 Brassica carinata HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 72.2
VMungo1127G1024 Vigna mungo HOM05D004332 ORTHO05D005116 5.5e-50 201.1 133 75.2
RcHm_v2.0_Chr5g0065351 Rosa chinensis HOM05D004332 ORTHO05D005116 7.2e-50 200.7 115 82.6
Sed0019241 Sechium edule HOM05D004332 ORTHO05D005116 9.4e-50 200.3 133 72.9
Aa31LG5G7210 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.2e-49 199.9 133 72.2
Aa31sc23G410 Aethionema arabicum HOM05D004332 ORTHO05D005116 1.6e-49 199.5 133 75.9
ECA247G3838 Erigeron canadensis HOM05D004332 ORTHO05D005116 1.6e-49 199.5 130 74.6
CsaV3_1G034360 Cucumis sativus L. HOM05D004332 ORTHO05D005116 2.1e-49 199.1 133 73.7
Phvul.011G063600 Phaseolus vulgaris HOM05D004332 ORTHO05D005116 2.1e-49 199.1 133 76.7
Carub.0004s1001 Capsella rubella HOM05D004332 ORTHO05D005116 2.7e-49 198.7 133 73.7
Sp4g11830 Schrenkiella parvula HOM05D004332 ORTHO05D005116 4.7e-49 198.0 133 72.9
Psat5g286720 Pisum sativum HOM05D004332 ORTHO05D005116 7.9e-49 197.2 113 82.3
MELO3C020622.2 Cucumis melo HOM05D004332 ORTHO05D005116 1.0e-48 196.8 133 72.2
A07p19440 Brassica napus HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.1
BraA07t29650Z Brassica rapa HOM05D004332 ORTHO05D005116 1.4e-48 196.4 134 73.1
Medtr2g097270 Medicago truncatula HOM05D004332 ORTHO05D005116 1.4e-48 196.4 133 75.2
Sc21g0005870 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.4e-48 196.4 133 75.9
BcaC02g11036 Brassica carinata HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 73.1
C04p21940 Brassica napus HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 73.1
BolC4t23714H Brassica oleracea HOM05D004332 ORTHO05D005116 1.8e-48 196.1 134 73.1
Sc12g0001450 Simmondsia chinensis HOM05D004332 ORTHO05D005116 1.8e-48 196.1 133 73.7
Hund04945 Selenicereus undatus HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 71.4
THA.LOC104826319 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 2.3e-48 195.7 133 73.7
AT2G29020 Arabidopsis thaliana HOM05D004332 ORTHO05D005116 3.0e-48 195.3 134 73.1
BcaB02g10224 Brassica carinata HOM05D004332 ORTHO05D005116 3.9e-48 194.9 134 76.1
PSO151G0214 Papaver somniferum HOM05D004332 ORTHO05D005116 3.9e-48 194.9 110 81.8
PSO339G1935 Papaver somniferum HOM05D004332 ORTHO05D005116 3.9e-48 194.9 110 81.8
THA.LOC104810775 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 3.9e-48 194.9 133 75.2
EL10Ac7g16034 Beta vulgaris HOM05D004332 ORTHO05D005116 5.1e-48 194.5 133 71.4
Sabra16G0146000 Salix brachista HOM05D004332 ORTHO05D005116 5.1e-48 194.5 127 78.7
Sed0025770 Sechium edule HOM05D004332 ORTHO05D005116 5.1e-48 194.5 133 70.7
Atru.chr3.3947 Acer truncatum HOM05D004332 ORTHO05D005116 1.1e-47 193.4 141 74.5
Ah.08g219640 Amaranthus hybridus HOM05D004332 ORTHO05D005116 1.1e-47 193.4 133 69.2
Aqoxy1G00923 Aquilegia oxysepala HOM05D004332 ORTHO05D005116 1.1e-47 193.4 129 77.5
Gorai.001G111400 Gossypium raimondii HOM05D004332 ORTHO05D005116 1.1e-47 193.4 125 78.4
Lj3g0024178 Lotus japonicus HOM05D004332 ORTHO05D005116 1.1e-47 193.4 133 72.2
AUR62009559 Chenopodium quinoa HOM05D004332 ORTHO05D005116 1.5e-47 193.0 133 68.4
Nitab4.5_0000463g0140 Nicotiana tabacum HOM05D004332 ORTHO05D005116 4.4e-47 191.4 133 70.7
Nitab4.5_0001326g0120 Nicotiana tabacum HOM05D004332 ORTHO05D005116 5.7e-47 191.0 133 70.7
THA.LOC104800671 Tarenaya hassleriana HOM05D004332 ORTHO05D005116 5.7e-47 191.0 133 71.4
SEGI_11468 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 9.7e-47 190.3 137 67.9
CDE04G0625 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.3e-46 189.9 110 78.2
AUR62001771 Chenopodium quinoa HOM05D004332 ORTHO05D005116 2.2e-46 189.1 133 66.9
Sabra09G0022800 Salix brachista HOM05D004332 ORTHO05D005116 2.2e-46 189.1 125 77.6
CDE07G0755 Ceratophyllum demersum HOM05D004332 ORTHO05D005116 1.4e-45 186.4 133 66.9
DCAR_018915 Daucus carota HOM05D004332 ORTHO05D005116 2.4e-45 185.7 122 71.3
Lsat_1_v5_gn_8_73521 Lactuca sativa HOM05D004332 ORTHO05D005116 2.4e-45 185.7 125 72.0
PGSC0003DMG400030417 Solanum tuberosum HOM05D004332 ORTHO05D005116 2.4e-45 185.7 133 68.4
arahy.Tifrunner.gnm1.ann1.WMUR0J Arachis hypogaea HOM05D004332 ORTHO05D005116 1.5e-44 183.0 120 74.2
CAN.G394.64 Capsicum annuum HOM05D004332 ORTHO05D005116 1.5e-44 183.0 133 68.4
arahy.Tifrunner.gnm1.ann1.TT4C38 Arachis hypogaea HOM05D004332 ORTHO05D005116 2.6e-44 182.2 130 70.8
arahy.Tifrunner.gnm1.ann1.A22IES Arachis hypogaea HOM05D004332 ORTHO05D005116 4.5e-44 181.4 125 71.2
Solyc06g076260.3 Solanum lycopersicum HOM05D004332 ORTHO05D005116 5.9e-44 181.0 133 65.4
HanXRQChr07g0197291 Helianthus annuus HOM05D004332 ORTHO05D005116 1.2e-41 173.3 142 63.4
Os05g0110600 Oryza sativa ssp. japonica HOM05D004332 ORTHO05D005116 1.5e-39 166.4 113 68.1
Mapoly0045s0062 Marchantia polymorpha HOM05D004332 ORTHO05D005116 5.7e-39 164.5 112 64.3
Zm00001eb266910 Zea mays HOM05D004332 ORTHO05D005116 2.2e-38 162.5 111 68.5
Nn2g13368 Nelumbo nucifera HOM05D004332 ORTHO05D005116 2.8e-38 162.2 91 84.6
SMO304G0081 Selaginella moellendorffii HOM05D004332 ORTHO05D005116 2.4e-37 159.1 103 65.0
Pp3c16_16760 Physcomitrium patens HOM05D004332 ORTHO05D005116 9.1e-37 157.1 113 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3328 Anthoceros agrestis HOM05D004332 ORTHO05D005116 1.6e-33 146.4 103 66.0
Pp3c6_17300 Physcomitrium patens HOM05D004332 ORTHO05D005116 6.8e-32 141.0 111 57.7
Actinidia07026 Actinidia chinensis HOM05D004332 ORTHO05D005116 1.3e-30 136.7 85 85.9
Haze_24115 Corylus avellana HOM05D004332 ORTHO05D005116 3.7e-30 135.2 79 83.5
vmacro03061 Vaccinium macrocarpon HOM05D004332 ORTHO05D005116 1.0e-27 127.1 77 80.5
Sopen06g032690 Solanum pennellii HOM05D004332 ORTHO05D005116 3.2e-26 122.1 78 71.8
TAR369G0503 Trochodendron aralioides HOM05D004332 ORTHO05D005116 1.4e-24 116.7 78 73.1
FAN21G1178 Fragaria x ananassa HOM05D004332 ORTHO05D005116 6.8e-24 114.4 73 72.6
AL4G23580 Arabidopsis lyrata HOM05D004332 ORTHO05D005116 1.2e-23 113.6 77 68.8
SEGI_12680 Sequoiadendron giganteum HOM05D004332 ORTHO05D005116 6.3e-22 107.8 84 61.9
Actinidia23932 Actinidia chinensis HOM05D004332 ORTHO05D005116 9.1e-21 104.0 60 91.7
Peaxi162Scf00774g00129 Petunia axillaris HOM05D004332 ORTHO05D005116 1.6e-17 93.2 56 76.8
SHI47893 Sapria himalayana HOM05D004332 ORTHO05D005116 5.4e-13 78.2 50 76.0
HPP92_028206 Vanilla planifolia HOM05D004332 ORTHO05D005116 2.0e-12 76.3 65 58.5
Cre08.g376000 Chlamydomonas reinhardtii HOM05D004332 ORTHO05D005116 1.9e-10 69.7 95 35.8
Eucgr.H02119 Eucalyptus grandis HOM05D004332 ORTHO05D005116 1.8e-08 63.2 55 58.2


User provided reference genes

Program Settings