Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 5.2e-131 471.1 241 100.0
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 5.8e-90 334.7 222 76.1
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.7e-81 306.6 222 71.6
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 3.2e-80 302.4 222 70.7
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 3.5e-79 298.9 226 67.7
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 2.1e-76 289.7 232 67.7
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 4.7e-76 288.5 227 69.2
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 2.4e-75 286.2 223 66.4
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 3.8e-73 278.9 225 66.7
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 7.8e-71 271.2 224 66.5
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 6.6e-70 268.1 222 62.6
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 7.3e-69 264.6 225 63.1
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 7.3e-69 264.6 225 63.1
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 1.3e-68 263.8 226 63.7
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 1.3e-68 263.8 225 63.6
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.6e-68 263.5 227 63.0
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.1e-67 260.8 223 65.0
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 1.4e-67 260.4 226 61.9
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 1.4e-67 260.4 225 62.2
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 3.1e-67 259.2 227 62.1
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 3.4e-66 255.8 219 60.7
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 9.3e-64 247.7 236 58.5
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 9.3e-64 247.7 232 59.5
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 1.2e-63 247.3 224 58.0
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 1.1e-61 240.7 227 58.6
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 1.5e-61 240.4 223 59.2
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 1.5e-61 240.4 223 59.2
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.3e-61 239.2 220 58.6
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 7.4e-61 238.0 222 59.5
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 6.2e-60 235.0 223 57.4
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 7.6e-58 228.0 225 58.7
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 3.8e-57 225.7 225 54.7
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 4.9e-57 225.3 244 56.1
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 6.4e-57 224.9 242 54.5
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 8.4e-57 224.6 227 55.9
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 1.4e-56 223.8 221 57.0
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 1.9e-56 223.4 223 57.0
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 5.5e-56 221.9 278 47.8
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 2.1e-55 219.9 229 52.0
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 2.7e-55 219.5 223 52.9
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 2.7e-55 219.5 228 58.3
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 4.6e-55 218.8 219 57.1
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 3.9e-54 215.7 187 63.6
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 5.1e-54 215.3 223 52.5
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 6.7e-54 214.9 221 56.1
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 2.5e-53 213.0 228 56.6
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 3.3e-53 212.6 221 54.8
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 5.6e-53 211.8 225 53.8
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 5.6e-53 211.8 225 52.4
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 5.6e-53 211.8 228 56.6
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 5.6e-53 211.8 229 53.3
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 1.6e-52 210.3 229 53.7
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.1e-52 209.9 230 54.3
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 2.8e-52 209.5 229 53.3
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 6.2e-52 208.4 236 52.1
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 1.4e-51 207.2 229 56.3
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.4e-51 207.2 228 53.5
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 4.0e-51 205.7 235 51.9
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.0e-51 205.7 226 55.3
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 4.0e-51 205.7 223 53.8
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 6.9e-51 204.9 169 64.5
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 9.0e-51 204.5 224 51.8
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 2.0e-50 203.4 218 54.6
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 4.5e-50 202.2 216 52.8
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 7.6e-50 201.4 221 52.5
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 1.3e-49 200.7 219 53.4
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 1.3e-49 200.7 219 54.3
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 1.7e-49 200.3 227 52.9
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 3.8e-49 199.1 225 52.0
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 6.5e-49 198.4 224 52.7
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 8.4e-49 198.0 223 52.0
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 1.1e-48 197.6 199 57.3
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 3.2e-48 196.1 225 51.6
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 4.2e-48 195.7 220 51.8
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 1.2e-47 194.1 223 52.9
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 3.5e-47 192.6 217 53.0
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 4.6e-47 192.2 230 51.3
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 6.0e-47 191.8 224 51.3
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 7.9e-47 191.4 232 47.8
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 3.0e-46 189.5 224 52.7
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 3.9e-46 189.1 224 49.6
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 2.5e-45 186.4 226 49.1
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 3.3e-45 186.0 238 47.9
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 5.7e-45 185.3 128 75.8
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 5.7e-45 185.3 226 48.7
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 1.6e-44 183.7 224 50.9
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 4.8e-44 182.2 231 50.2
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 2.0e-42 176.8 221 48.9
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 1.3e-41 174.1 177 58.8
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 1.7e-41 173.7 220 47.7
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.4e-40 170.6 228 46.5
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 3.6e-39 166.0 332 37.0
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 6.1e-39 165.2 230 43.0
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 1.0e-38 164.5 168 58.3
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 9.7e-37 157.9 222 47.7
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.8e-36 155.6 236 46.6
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 6.3e-36 155.2 222 40.1
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 6.3e-36 155.2 130 61.5
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 3.1e-35 152.9 229 43.7
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 6.9e-35 151.8 229 43.7
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 7.7e-34 148.3 227 41.4
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 6.5e-33 145.2 136 58.1
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 1.0e-30 137.9 129 56.6
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 1.4e-30 137.5 225 40.0
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 3.0e-30 136.3 228 39.5
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 1.0e-25 121.3 87 69.0
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 9.4e-24 114.8 124 50.8
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 3.6e-23 112.8 126 50.8
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 1.5e-21 107.5 197 39.6
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 1.8e-19 100.5 113 51.3
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 2.4e-19 100.1 241 34.4
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 5.0e-17 92.4 107 52.3
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 1.6e-15 87.4 228 31.6
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 6.1e-15 85.5 56 75.0
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 8.8e-14 81.6 244 29.1
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 4.4e-13 79.3 92 54.3
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 3.8e-09 66.2 103 37.9
Actinidia38361 Actinidia chinensis HOM05D000279 ORTHO05D000957 8.5e-09 65.1 52 61.5
SHI16259 Sapria himalayana HOM05D006456 ORTHO05D007588 1.5e-08 64.3 49 67.3
CBR_g17172 Chara braunii HOM05D006456 ORTHO05D007588 2.7e-07 60.1 88 38.6
DCAR_030977 Daucus carota HOM05D000984 ORTHO05D007588 1.0e-06 58.2 90 31.1
DCAR_030021 Daucus carota HOM05D000984 ORTHO05D007588 2.3e-06 57.0 90 30.0
Thhalv10015519m.g Eutrema salsugineum HOM05D000984 ORTHO05D001096 4.0e-06 56.2 84 40.5


User provided reference genes

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