Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.7e-79 299.3 156 100.0
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 9.1e-20 100.9 132 50.8
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.4e-17 93.6 132 49.2
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 6.1e-16 88.2 130 46.2
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 8.0e-16 87.8 132 46.2
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 1.8e-15 86.7 132 46.2
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 5.7e-14 81.6 133 45.1
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.7e-14 81.6 132 45.5
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 5.7e-14 81.6 132 44.7
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 7.4e-14 81.3 132 43.2
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 9.7e-14 80.9 132 41.7
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 9.7e-14 80.9 132 43.9
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 2.8e-13 79.3 132 42.4
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 3.7e-13 79.0 132 42.4
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 4.8e-13 78.6 133 44.4
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 8.2e-13 77.8 132 41.7
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 1.1e-12 77.4 133 44.4
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 2.4e-12 76.3 130 43.1
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 3.1e-12 75.9 132 40.9
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 4.1e-12 75.5 133 43.6
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 7.0e-12 74.7 132 43.2
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 7.0e-12 74.7 132 43.9
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 7.0e-12 74.7 133 40.6
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 9.1e-12 74.3 132 43.2
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 9.1e-12 74.3 133 42.1
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 9.1e-12 74.3 132 43.9
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.2e-11 73.9 132 43.9
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 1.2e-11 73.9 133 42.9
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.6e-11 73.6 154 39.0
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 2.0e-11 73.2 131 41.2
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 3.5e-11 72.4 133 40.6
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.5e-11 72.4 133 40.6
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 3.5e-11 72.4 133 42.1
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 3.5e-11 72.4 133 40.6
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 4.5e-11 72.0 131 39.7
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 4.5e-11 72.0 134 43.3
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 5.9e-11 71.6 132 43.2
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 5.9e-11 71.6 133 43.6
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 5.9e-11 71.6 133 42.1
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 7.7e-11 71.2 135 40.7
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.0e-10 70.9 132 42.4
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 1.0e-10 70.9 131 41.2
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 6.5e-10 68.2 132 40.2
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 8.5e-10 67.8 131 41.2
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.1e-09 67.4 132 41.7
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.1e-09 67.4 139 40.3
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.1e-09 67.4 133 40.6
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.5e-09 67.0 139 38.8
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 2.5e-09 66.2 131 38.9
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.5e-09 66.2 131 40.5
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 3.2e-09 65.9 132 40.9
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 3.2e-09 65.9 146 39.7
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 3.2e-09 65.9 131 38.9
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 4.2e-09 65.5 134 38.8
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 7.2e-09 64.7 133 37.6
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 9.4e-09 64.3 131 40.5
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 9.4e-09 64.3 139 37.4
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 9.4e-09 64.3 139 37.4
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 1.2e-08 63.9 133 38.3
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 1.6e-08 63.5 124 41.1
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 2.1e-08 63.2 132 34.1
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.1e-08 63.2 136 37.5
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 2.7e-08 62.8 132 35.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.1e-08 61.6 124 38.7
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 8.0e-08 61.2 130 36.9
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 8.0e-08 61.2 132 37.1
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 8.0e-08 61.2 133 37.6
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 8.0e-08 61.2 135 38.5
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.4e-07 60.5 136 35.3
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.4e-07 60.5 124 37.9
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.4e-07 60.5 124 37.9
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 3.0e-07 59.3 56 53.6
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 4.0e-07 58.9 126 38.9
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 5.2e-07 58.5 132 31.8
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 1.5e-06 57.0 133 35.3
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 9.7e-06 54.3 130 34.6


User provided reference genes

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