Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027875 Camellia sinensis var. sinensis HOM05D058386 ORTHO05D033915 2.0e-65 252.3 129 100.0
CSS0042295 Camellia sinensis var. sinensis HOM05D058386 ORTHO05D033915 6.1e-62 240.7 129 95.3
Actinidia35252 Actinidia chinensis HOM05D000300 ORTHO05D000383 2.0e-20 102.8 81 75.3
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 8.3e-19 97.4 84 67.9
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 2.4e-18 95.9 84 69.0
Actinidia18765 Actinidia chinensis HOM05D000803 ORTHO05D001162 4.1e-18 95.1 81 71.6
CSS0007021 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D001162 4.1e-18 95.1 85 69.4
Actinidia09678 Actinidia chinensis HOM05D000803 ORTHO05D001162 4.6e-17 91.7 84 66.7
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 1.0e-16 90.5 84 64.3
Rhsim04G0020500 Rhododendron simsii HOM05D000397 ORTHO05D002023 1.3e-16 90.1 81 67.9
Lsat_1_v5_gn_7_105180 Lactuca sativa HOM05D000803 ORTHO05D001162 3.0e-16 89.0 87 64.4
Hma1.2p1_1620F.1_g294000 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 2.5e-15 85.9 92 58.7
Rhsim06G0197400 Rhododendron simsii HOM05D000803 ORTHO05D001162 2.5e-15 85.9 87 64.4
Lsat_1_v5_gn_9_96840 Lactuca sativa HOM05D000803 ORTHO05D001162 4.3e-15 85.1 88 65.9
ECA236G4303 Erigeron canadensis HOM05D000803 ORTHO05D001162 9.5e-15 84.0 87 60.9
HanXRQChr10g0302791 Helianthus annuus HOM05D000803 ORTHO05D001162 1.2e-14 83.6 88 63.6
Hma1.2p1_0932F.1_g238250 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 2.1e-14 82.8 92 56.5
vmacro11849 Vaccinium macrocarpon HOM05D000803 ORTHO05D001162 2.8e-14 82.4 86 60.5
vmacro09536 Vaccinium macrocarpon HOM05D000803 ORTHO05D001162 3.6e-14 82.0 81 61.7
Nitab4.5_0002383g0100 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.4e-13 80.1 82 61.0
Nitab4.5_0000207g0140 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.8e-13 79.7 82 59.8
Hma1.2p1_0480F.1_g161820 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 8.9e-13 77.4 85 61.2
HanXRQChr11g0328441 Helianthus annuus HOM05D000803 ORTHO05D001162 1.5e-12 76.6 87 57.5
GSVIVG01014360001 Vitis vinifera HOM05D000803 ORTHO05D001162 1.7e-11 73.2 84 53.6
Hma1.2p1_2210F.1_g317170 Hydrangea macrophylla HOM05D000803 ORTHO05D001162 2.2e-11 72.8 84 59.5
Nitab4.5_0013630g0030 Nicotiana tabacum HOM05D000803 ORTHO05D001162 2.2e-11 72.8 82 59.8
DCAR_019548 Daucus carota HOM05D000803 ORTHO05D001162 2.9e-11 72.4 81 61.7
Cc05_g12140 Coffea canephora HOM05D000803 ORTHO05D001162 3.7e-11 72.0 81 61.7
Cfa020599 Carpinus fangiana HOM05D000803 ORTHO05D001162 4.9e-11 71.6 83 57.8
CiPaw.11G168300 Carya illinoinensis HOM05D000803 ORTHO05D001162 4.9e-11 71.6 87 55.2
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 1.4e-10 70.1 85 55.3
CANSAT56G3897 Cannabis sativa HOM05D000803 ORTHO05D001162 1.9e-10 69.7 81 54.3
Peaxi162Scf00000g04014 Petunia axillaris HOM05D000803 ORTHO05D001162 2.4e-10 69.3 81 53.1
Sopen07g031380 Solanum pennellii HOM05D000803 ORTHO05D001162 2.4e-10 69.3 82 53.7
Haze_09415 Corylus avellana HOM05D000803 ORTHO05D001162 4.1e-10 68.6 83 54.2
PGSC0003DMG400015360 Solanum tuberosum HOM05D000803 ORTHO05D001162 4.1e-10 68.6 82 54.9
PGSC0003DMG400012420 Solanum tuberosum HOM05D000803 ORTHO05D001162 9.2e-10 67.4 82 52.4
AUR62034259 Chenopodium quinoa HOM05D000803 ORTHO05D001162 1.2e-09 67.0 94 52.1
Sopen12g007120 Solanum pennellii HOM05D000803 ORTHO05D001162 1.2e-09 67.0 82 54.9
FAN16G2378 Fragaria x ananassa HOM05D000803 ORTHO05D001162 1.6e-09 66.6 84 53.6
TWI38G1250 Tripterygium wilfordii HOM05D000803 ORTHO05D001162 1.6e-09 66.6 93 47.3
HanXRQChr03g0078551 Helianthus annuus HOM05D000803 ORTHO05D001162 2.0e-09 66.2 87 57.5
FvH4_3g20140 Fragaria vesca HOM05D000803 ORTHO05D001162 2.7e-09 65.9 83 54.2
SalBow7G1844 Salvia bowleyana HOM05D000803 ORTHO05D001162 2.7e-09 65.9 80 50.0
SalBow7G3672 Salvia bowleyana HOM05D000803 ORTHO05D001162 2.7e-09 65.9 80 50.0
FAN21G2949 Fragaria x ananassa HOM05D000803 ORTHO05D001162 3.5e-09 65.5 83 53.0
Oeu005416.1 Olea europaea HOM05D000803 ORTHO05D001162 3.5e-09 65.5 79 54.4
Migut.M00815 Erythranthe guttata HOM05D000803 ORTHO05D001162 4.6e-09 65.1 85 50.6
Solyc07g063190.3 Solanum lycopersicum HOM05D000803 ORTHO05D001162 4.6e-09 65.1 82 52.4
Solyc12g013810.2 Solanum lycopersicum HOM05D000803 ORTHO05D001162 4.6e-09 65.1 81 54.3
FAN25G0768 Fragaria x ananassa HOM05D000803 ORTHO05D001162 6.0e-09 64.7 84 52.4
RcHm_v2.0_Chr5g0033941 Rosa chinensis HOM05D000803 ORTHO05D001162 6.0e-09 64.7 87 50.6
Nitab4.5_0001551g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 7.8e-09 64.3 82 52.4
Sc16g0006930 Simmondsia chinensis HOM05D000803 ORTHO05D001162 7.8e-09 64.3 83 51.8
TAR627G0831 Trochodendron aralioides HOM05D000803 ORTHO05D033915 1.0e-08 63.9 86 48.8
TAR629G0153 Trochodendron aralioides HOM05D000803 ORTHO05D001162 1.0e-08 63.9 89 44.9
Nitab4.5_0003688g0090 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.3e-08 63.5 82 51.2
MD03G1226200 Malus domestica HOM05D000803 ORTHO05D001162 2.3e-08 62.8 88 48.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.3e-08 62.8 81 53.1
Oeu011683.1 Olea europaea HOM05D000803 ORTHO05D001162 3.9e-08 62.0 81 50.6
CAN.G739.6 Capsicum annuum HOM05D000803 ORTHO05D001162 5.0e-08 61.6 83 54.2
MD11G1244900 Malus domestica HOM05D000803 ORTHO05D001162 6.6e-08 61.2 88 50.0
CiPaw.12G117500 Carya illinoinensis HOM05D000803 ORTHO05D001162 8.6e-08 60.8 87 49.4
SGA_v2.0_scaffold9G04921 Striga asiatica HOM05D000397 ORTHO05D002023 8.6e-08 60.8 79 48.1
Nitab4.5_0000332g0020 Nicotiana tabacum HOM05D000803 ORTHO05D001162 1.1e-07 60.5 81 55.6
Solyc10g006970.3 Solanum lycopersicum HOM05D000803 ORTHO05D001162 1.5e-07 60.1 95 43.2
Migut.H01932 Erythranthe guttata HOM05D000803 ORTHO05D001162 1.9e-07 59.7 82 53.7
Sc07g0002590 Simmondsia chinensis HOM05D000803 ORTHO05D001162 2.5e-07 59.3 85 45.9
TWI38G0860 Tripterygium wilfordii HOM05D000803 ORTHO05D001162 2.5e-07 59.3 86 47.7
Atru.chr2.2669 Acer truncatum HOM05D000803 ORTHO05D001162 7.3e-07 57.8 83 47.0
SGA_v2.0_scaffold73G24271 Striga asiatica HOM05D000803 ORTHO05D001162 7.3e-07 57.8 83 47.0
PGSC0003DMG400025034 Solanum tuberosum HOM05D000803 ORTHO05D001162 9.5e-07 57.4 95 42.1
EL10Ac4g08149 Beta vulgaris HOM05D000803 ORTHO05D001162 1.2e-06 57.0 84 48.8
A05p34050 Brassica napus HOM05D000803 ORTHO05D001162 1.2e-06 57.0 89 41.6
BraA05t22226Z Brassica rapa HOM05D000803 ORTHO05D001162 1.2e-06 57.0 89 41.6
Eucgr.F03319 Eucalyptus grandis HOM05D000803 ORTHO05D001162 1.2e-06 57.0 84 47.6
Nn1g06573 Nelumbo nucifera HOM05D000803 ORTHO05D001162 1.2e-06 57.0 83 49.4
Sopen10g002880 Solanum pennellii HOM05D000803 ORTHO05D001162 1.2e-06 57.0 94 42.6
unitig_21.g20072 Utricularia gibba HOM05D000803 ORTHO05D001162 1.2e-06 57.0 81 45.7
C05p51810 Brassica napus HOM05D000803 ORTHO05D001162 1.6e-06 56.6 89 41.6
TAR626G1587 Trochodendron aralioides HOM05D000803 ORTHO05D001162 1.6e-06 56.6 85 47.1
Ciclev10009624m.g Citrus clementina HOM05D000803 ORTHO05D001162 2.1e-06 56.2 85 49.4
Manes.03G111300 Manihot esculenta HOM05D000803 ORTHO05D001162 2.1e-06 56.2 88 45.5
BcaC05g28978 Brassica carinata HOM05D000803 ORTHO05D001162 3.6e-06 55.5 89 40.4
BolC5t33867H Brassica oleracea HOM05D000803 ORTHO05D001162 3.6e-06 55.5 89 40.4
CDE02G2128 Ceratophyllum demersum HOM05D000803 ORTHO05D001162 3.6e-06 55.5 92 45.7
Oeu060548.2 Olea europaea HOM05D000803 ORTHO05D001162 4.7e-06 55.1 81 48.1
CDE01G0459 Ceratophyllum demersum HOM05D001582 ORTHO05D001598 8.1e-06 54.3 92 44.6


User provided reference genes

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