Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 1.8e-48 195.7 102 100.0
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.0e-24 115.2 103 66.0
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 1.7e-22 109.4 144 51.4
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-21 105.9 101 62.4
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.8e-21 105.9 106 60.4
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 7.8e-20 100.5 100 62.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 6.6e-19 97.4 95 60.0
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 8.6e-19 97.1 129 53.5
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.5e-18 96.3 100 59.0
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 1.9e-18 95.9 102 57.8
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.5e-18 95.5 101 56.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 4.3e-18 94.7 86 64.0
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 9.5e-18 93.6 96 59.4
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 9.5e-18 93.6 96 59.4
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.6e-17 92.8 100 62.0
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 2.8e-17 92.0 98 58.2
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.0e-16 90.1 98 57.1
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.0e-16 88.6 101 57.4
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-15 86.7 101 53.5
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 1.2e-15 86.7 101 54.5
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.2e-15 86.7 85 60.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 1.2e-15 86.7 98 54.1
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.5e-15 86.3 101 55.4
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 3.4e-15 85.1 122 49.2
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 4.4e-15 84.7 104 56.7
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.7e-14 82.8 95 53.7
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.2e-14 82.4 100 51.0
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 2.9e-14 82.0 111 49.5
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 3.7e-14 81.6 98 53.1
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.1e-13 80.1 93 52.7
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.1e-13 80.1 99 51.5
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 4.1e-13 78.2 100 49.0
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 9.2e-13 77.0 95 50.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 1.6e-12 76.3 102 50.0
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.6e-12 76.3 95 50.5
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.0e-12 75.9 102 50.0
CSS0020997 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.0e-12 75.9 45 86.7
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 2.7e-12 75.5 102 49.0
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 2.7e-12 75.5 102 49.0
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 2.7e-12 75.5 47 80.9
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.6e-12 74.7 94 52.1
CSS0044842 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 6.0e-12 74.3 45 84.4
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.0e-12 74.3 63 61.9
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 7.8e-12 73.9 102 52.9
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 7.8e-12 73.9 86 51.2
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 7.8e-12 73.9 47 76.6
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 1.3e-11 73.2 97 51.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.3e-11 73.2 102 52.9
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.3e-11 73.2 87 51.7
CSS0048427 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.3e-11 72.4 43 88.4
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 5.0e-11 71.2 83 54.2
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 8.6e-11 70.5 76 53.9
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 1.5e-10 69.7 100 48.0
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 7.3e-10 67.4 99 45.5
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.2e-09 66.6 90 47.8
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 1.6e-09 66.2 122 44.3
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.6e-09 66.2 41 78.0
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 2.1e-09 65.9 91 47.3
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 2.1e-09 65.9 103 46.6
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.1e-09 65.9 92 46.7
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 6.2e-09 64.3 101 44.6
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 6.2e-09 64.3 91 49.5
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 8.0e-09 63.9 44 75.0
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 1.4e-08 63.2 129 38.8
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 2.3e-08 62.4 44 72.7
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 6.8e-08 60.8 40 75.0
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 8.9e-08 60.5 92 48.9
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 8.9e-08 60.5 40 75.0
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 8.9e-08 60.5 43 72.1
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 1.2e-07 60.1 105 43.8
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.2e-07 60.1 54 63.0
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 2.0e-07 59.3 169 34.9
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 2.0e-07 59.3 100 44.0
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 2.6e-07 58.9 52 57.7
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 2.6e-07 58.9 81 46.9
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 3.4e-07 58.5 111 40.5
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 3.4e-07 58.5 78 50.0
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.4e-07 58.2 48 60.4
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.4e-07 58.2 48 60.4
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.4e-07 58.2 48 58.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 7.5e-07 57.4 103 44.7
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 7.5e-07 57.4 102 40.2
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 9.8e-07 57.0 109 45.0
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 9.8e-07 57.0 102 44.1
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 1.3e-06 56.6 97 42.3
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.7e-06 56.2 103 43.7
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 1.7e-06 56.2 91 40.7
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.9e-06 55.5 46 69.6
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 3.7e-06 55.1 39 74.4
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.9e-06 54.7 43 62.8
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 4.9e-06 54.7 43 62.8
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 8.3e-06 53.9 103 41.7
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 8.3e-06 53.9 38 76.3
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 8.3e-06 53.9 51 60.8
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 8.3e-06 53.9 45 62.2


User provided reference genes

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