Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.3e-210 734.6 413 100.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.8e-120 436.8 389 74.8
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.4e-120 436.4 389 74.8
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 6.4e-97 358.6 310 68.1
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 3.9e-94 349.4 381 55.4
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 4.3e-93 345.9 405 54.3
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 7.3e-93 345.1 382 55.8
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 4.9e-89 332.4 402 54.0
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 3.2e-88 329.7 402 53.5
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 5.4e-88 328.9 381 53.3
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.4e-88 328.9 396 51.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 3.5e-87 326.2 390 53.6
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 6.0e-87 325.5 399 51.6
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 1.7e-86 323.9 397 50.9
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 5.1e-86 322.4 376 51.9
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.6e-85 318.9 395 51.1
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 5.3e-83 312.4 417 49.9
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 9.0e-83 311.6 417 49.6
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 3.4e-82 309.7 417 49.4
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 4.5e-82 309.3 305 56.7
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 7.6e-82 308.5 390 50.5
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 8.4e-81 305.1 390 57.2
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 4.2e-80 302.8 392 50.5
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 7.1e-80 302.0 386 51.3
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 9.3e-80 301.6 306 58.2
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 9.3e-80 301.6 305 55.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 3.5e-79 299.7 398 50.0
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 4.6e-79 299.3 305 57.4
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 6.0e-79 298.9 404 49.3
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 7.9e-79 298.5 393 51.1
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 1.0e-78 298.1 390 49.2
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 5.1e-78 295.8 306 56.2
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 4.3e-77 292.7 404 51.7
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 9.6e-77 291.6 387 51.9
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 1.6e-76 290.8 390 53.3
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 6.2e-76 288.9 386 50.5
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 6.2e-76 288.9 390 49.7
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 6.2e-76 288.9 395 48.6
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 1.4e-75 287.7 385 50.6
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 1.4e-75 287.7 397 50.6
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.8e-75 287.3 306 55.9
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.8e-75 287.3 405 52.8
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 1.2e-74 284.6 379 48.8
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 2.6e-74 283.5 405 48.6
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 3.4e-74 283.1 396 50.3
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 7.6e-74 282.0 306 53.6
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 7.6e-74 282.0 396 49.5
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 9.9e-74 281.6 305 53.4
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 2.2e-73 280.4 381 50.7
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 2.2e-73 280.4 381 50.7
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 3.8e-73 279.6 381 50.1
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 6.4e-73 278.9 381 50.4
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 8.4e-73 278.5 381 50.4
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 1.4e-72 277.7 399 47.4
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 1.9e-72 277.3 381 50.4
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 3.2e-72 276.6 390 50.8
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 7.1e-72 275.4 390 45.9
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 1.2e-71 274.6 390 50.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 1.6e-71 274.2 310 53.2
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 3.5e-71 273.1 403 48.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 4.6e-71 272.7 308 53.2
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 6.0e-71 272.3 400 48.5
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 7.9e-71 271.9 393 47.1
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 7.9e-71 271.9 390 55.1
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 7.9e-71 271.9 306 53.3
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 7.9e-71 271.9 399 49.9
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 2.3e-70 270.4 377 46.4
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 3.9e-70 269.6 402 49.0
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.1e-70 269.2 260 62.3
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 8.7e-70 268.5 378 47.4
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 8.7e-70 268.5 380 46.3
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 1.5e-69 267.7 396 50.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 1.5e-69 267.7 305 50.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 3.3e-69 266.5 399 45.4
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 4.3e-69 266.2 305 49.5
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 5.6e-69 265.8 381 48.0
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 1.6e-68 264.2 305 49.2
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 3.7e-68 263.1 395 48.6
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 4.8e-68 262.7 383 46.0
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 4.8e-68 262.7 305 49.2
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 4.8e-68 262.7 381 53.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 6.2e-68 262.3 382 47.6
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 1.1e-67 261.5 384 47.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 1.1e-67 261.5 389 46.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.4e-67 261.2 396 44.9
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 3.1e-67 260.0 390 54.4
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 4.0e-67 259.6 390 48.2
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 6.9e-67 258.8 386 45.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 6.9e-67 258.8 386 45.9
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 9.0e-67 258.5 384 46.4
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 1.2e-66 258.1 305 48.9
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 1.5e-66 257.7 390 49.2
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 2.0e-66 257.3 305 48.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 5.8e-66 255.8 305 48.9
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 7.6e-66 255.4 379 44.9
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 7.6e-66 255.4 382 44.5
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 2.5e-64 250.4 387 44.2
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 5.5e-64 249.2 282 52.1
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 2.3e-62 243.8 206 63.6
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 5.1e-62 242.7 383 43.3
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 5.3e-59 232.6 390 50.8
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 5.3e-59 232.6 396 48.7
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 6.5e-57 225.7 389 39.8
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 5.5e-56 222.6 305 45.9
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 7.2e-56 222.2 382 44.0
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 7.2e-56 222.2 218 55.0
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 7.2e-56 222.2 305 44.6
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 7.9e-55 218.8 324 42.0
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 8.7e-54 215.3 219 53.9
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 4.3e-53 213.0 309 43.7
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.8e-52 210.3 198 59.6
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 2.8e-52 210.3 198 59.6
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.4e-51 208.0 305 42.0
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 2.0e-50 204.1 305 40.7
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 7.9e-47 192.2 234 50.4
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 1.5e-42 177.9 175 57.7
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 7.7e-42 175.6 174 53.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 4.2e-40 169.9 129 69.0
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.1e-39 167.5 124 71.0
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.8e-38 164.5 178 55.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.0e-33 148.7 125 59.2
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 4.2e-32 143.3 300 37.0
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.3e-30 137.5 106 65.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.7e-23 113.2 348 30.2
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 5.2e-22 109.8 302 28.8
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 6.1e-15 86.3 312 26.9
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 3.3e-08 63.9 82 47.6
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 6.8e-06 56.2 63 49.2


User provided reference genes

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