Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.8e-168 594.7 294 100.0
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 2.3e-125 452.6 311 75.6
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.8e-123 445.7 284 77.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 6.5e-120 434.5 288 75.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 8.8e-117 424.1 292 72.6
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.2e-116 423.7 260 82.3
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 4.8e-115 418.3 298 72.8
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 1.8e-114 416.4 288 71.2
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 5.9e-113 411.4 293 70.0
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.2e-112 409.5 291 71.1
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 3.8e-112 408.7 287 71.1
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 5.0e-112 408.3 287 70.7
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 5.0e-112 408.3 258 80.2
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 6.5e-112 407.9 288 70.1
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 8.5e-112 407.5 289 73.0
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.1e-111 407.1 289 72.7
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.9e-111 406.4 288 70.1
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 5.5e-111 404.8 287 71.8
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 7.2e-111 404.4 290 70.3
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.6e-110 403.3 284 71.1
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 2.1e-110 402.9 292 68.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 6.1e-110 401.4 283 71.0
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.0e-109 400.6 283 71.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 8.8e-109 397.5 285 70.2
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.2e-108 397.1 293 68.6
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.2e-108 397.1 293 68.6
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.6e-108 396.0 291 67.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 9.8e-108 394.0 286 69.2
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 4.9e-107 391.7 284 68.7
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.4e-106 390.2 286 68.9
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 2.4e-106 389.4 290 70.3
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 3.1e-106 389.0 280 68.9
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 4.1e-106 388.7 285 66.7
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 7.0e-106 387.9 289 67.1
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.2e-106 387.5 287 69.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.2e-105 387.1 287 69.0
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 1.6e-105 386.7 279 67.4
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 4.5e-105 385.2 285 68.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 4.5e-105 385.2 252 76.2
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.0e-104 384.0 289 66.4
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.7e-104 383.3 294 66.0
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.7e-104 383.3 288 66.7
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.3e-104 382.9 265 73.2
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 6.6e-104 381.3 289 64.4
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.6e-104 381.3 289 67.1
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 8.6e-104 380.9 280 68.6
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.5e-103 380.2 286 72.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.3e-103 379.0 281 67.6
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.2e-102 377.1 289 65.1
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 2.8e-102 375.9 315 61.0
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.6e-102 375.6 283 65.4
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 3.6e-102 375.6 286 64.0
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 6.1e-102 374.8 289 63.0
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.0e-101 372.5 288 64.9
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 4.0e-101 372.1 225 79.1
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 4.0e-101 372.1 297 65.0
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.0e-100 369.8 285 63.2
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 4.4e-100 368.6 289 65.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 7.5e-100 367.9 257 69.6
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.3e-99 367.1 281 67.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.1e-98 364.0 288 63.9
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.4e-98 363.6 280 64.6
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.8e-98 363.2 280 65.7
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.1e-98 362.1 280 64.6
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.0e-98 361.3 253 70.8
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 9.2e-98 360.9 280 64.3
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 5.9e-97 358.2 272 65.1
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.0e-96 357.5 225 74.2
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.7e-96 356.7 280 64.6
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 5.0e-96 355.1 282 62.8
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.6e-96 354.8 280 63.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 1.1e-95 354.0 280 62.5
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.5e-95 353.6 279 65.9
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.5e-95 353.6 280 63.6
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.5e-95 353.6 272 64.7
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.9e-95 353.2 283 61.5
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.5e-95 352.8 253 70.4
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 2.8e-94 349.4 283 61.1
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.4e-93 347.1 354 57.3
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 5.2e-93 345.1 286 62.9
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.8e-93 344.7 250 66.4
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 8.9e-93 344.4 282 64.5
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.9e-93 344.4 250 66.4
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.4e-92 342.4 318 56.6
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.3e-91 340.5 224 68.8
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.1e-90 337.4 217 73.7
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.1e-90 337.4 220 71.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 3.2e-90 335.9 341 56.0
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 9.2e-90 334.3 224 68.3
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.5e-89 332.4 330 53.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 3.0e-88 329.3 227 70.5
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 6.6e-88 328.2 288 57.6
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 8.6e-88 327.8 274 59.9
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.5e-87 326.2 256 66.0
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 2.5e-87 326.2 234 65.4
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 4.3e-87 325.5 225 67.6
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.8e-86 322.8 338 51.2
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 4.7e-86 322.0 228 70.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.9e-83 312.0 269 58.7
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.1e-82 310.8 192 77.1
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 7.8e-81 304.7 248 61.3
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 7.8e-81 304.7 248 61.3
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 7.8e-81 304.7 220 69.1
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.3e-80 303.1 248 60.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.3e-80 303.1 248 60.5
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.1e-79 300.8 249 60.2
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.8e-77 293.5 169 81.7
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 9.6e-71 271.2 272 55.1
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 3.6e-70 269.2 166 75.9
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.2e-68 264.2 172 72.1
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 9.3e-66 254.6 282 50.7
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.2e-58 229.6 255 46.3
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 7.1e-58 228.4 254 46.5
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 4.3e-55 219.2 243 44.4
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.6e-55 218.8 143 72.7
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 1.6e-54 217.2 133 76.7
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.6e-52 209.9 259 48.3
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.7e-51 207.2 212 45.3
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 1.6e-46 190.7 198 47.0
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 2.4e-45 186.8 137 66.4
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 6.9e-45 185.3 150 64.0
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 2.2e-43 180.3 137 70.8
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 1.4e-42 177.6 105 77.1
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 4.5e-28 129.4 186 35.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.1e-26 124.8 131 53.4
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.0e-23 114.0 186 34.9
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.6e-23 113.6 80 65.0
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.3e-22 111.3 80 65.0
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 2.8e-22 110.2 85 58.8
CSS0008660 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.4e-21 107.1 60 90.0
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.2e-19 100.5 86 57.0
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.9e-19 100.1 119 49.6
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.5e-18 97.1 83 54.2
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.2e-17 94.7 70 62.9
PRCOL_00000045 Prasinoderma coloniale HOM05D005379 ORTHO05D006661 2.6e-12 77.0 186 26.9
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 2.9e-11 73.6 84 50.0
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 6.5e-11 72.4 47 70.2
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 6.1e-09 65.9 52 61.5
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 3.3e-07 60.1 34 82.4
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.3e-07 60.1 36 69.4
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 1.7e-06 57.8 40 67.5


User provided reference genes

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