Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027856 Camellia sinensis var. sinensis HOM05D001593 ORTHO05D010032 6.8e-122 440.7 221 100.0
Actinidia05168 Actinidia chinensis HOM05D001593 ORTHO05D010032 3.8e-48 195.7 213 53.5
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 2.3e-40 169.9 211 44.5
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 1.2e-38 164.1 212 44.8
CiPaw.12G122400 Carya illinoinensis HOM05D001593 ORTHO05D010032 8.0e-38 161.4 211 44.5
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 6.8e-37 158.3 211 42.2
QL08p018774 Quercus lobata HOM05D001593 ORTHO05D010032 1.5e-36 157.1 212 42.5
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 5.7e-36 155.2 209 42.6
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 4.9e-35 152.1 212 42.9
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.8e-34 150.2 211 38.9
FAN16G2191 Fragaria x ananassa HOM05D001593 ORTHO05D010032 2.4e-34 149.8 209 42.6
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 5.4e-34 148.7 211 41.7
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 5.4e-34 148.7 211 37.4
TPR.G7332 Trifolium pratense HOM05D001593 ORTHO05D010032 1.6e-33 147.1 210 41.4
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 4.6e-33 145.6 209 39.7
Medtr3g055130 Medicago truncatula HOM05D001593 ORTHO05D010032 1.1e-31 141.0 213 39.0
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 2.5e-31 139.8 213 38.0
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 2.5e-31 139.8 211 37.0
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 3.3e-31 139.4 211 37.9
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 3.3e-31 139.4 209 39.2
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 4.3e-31 139.0 213 38.0
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 1.2e-30 137.5 214 37.4
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 2.1e-30 136.7 213 38.5
Lalb_Chr17g0345681 Lupinus albus HOM05D001593 ORTHO05D010032 2.8e-30 136.3 214 38.8
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 2.8e-30 136.3 208 36.5
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 6.2e-30 135.2 211 39.3
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 8.0e-30 134.8 213 37.6
Lj3g0024706 Lotus japonicus HOM05D001593 ORTHO05D010032 8.0e-30 134.8 214 36.4
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 1.0e-29 134.4 214 36.4
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 1.8e-29 133.7 213 38.0
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 6.8e-29 131.7 211 38.4
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 6.8e-29 131.7 209 35.4
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 4.4e-28 129.0 212 35.8
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 9.8e-28 127.9 213 35.7
VMungo1127G1295 Vigna mungo HOM05D001593 ORTHO05D010032 9.8e-28 127.9 213 36.6
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.3e-27 127.5 211 37.4
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 1.3e-27 127.5 213 34.3
arahy.Tifrunner.gnm1.ann1.SVGI7B Arachis hypogaea HOM05D001593 ORTHO05D010032 1.7e-27 127.1 215 35.8
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 1.7e-27 127.1 213 36.6
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 2.2e-27 126.7 211 37.0
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 6.4e-27 125.2 211 36.5
arahy.Tifrunner.gnm1.ann1.I7A6WZ Arachis hypogaea HOM05D001593 ORTHO05D010032 2.4e-26 123.2 215 34.9
ECA246G1386 Erigeron canadensis HOM05D001593 ORTHO05D010032 4.1e-26 122.5 209 30.6
ClCG10G006610 Citrullus lanatus HOM05D001593 ORTHO05D010032 7.0e-26 121.7 214 36.9
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 1.2e-25 120.9 209 32.5
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 2.7e-25 119.8 211 35.1
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 4.6e-25 119.0 211 34.6
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.7e-24 117.1 213 34.3
MELO3C016546.2 Cucumis melo HOM05D001593 ORTHO05D010032 3.9e-24 115.9 213 33.3
RcHm_v2.0_Chr5g0035101 Rosa chinensis HOM05D001593 ORTHO05D010032 1.9e-23 113.6 209 37.3
FvH4_3g20810 Fragaria vesca HOM05D001593 ORTHO05D010032 3.1e-21 106.3 210 36.7
FAN16G0784 Fragaria x ananassa HOM05D001593 ORTHO05D010032 1.2e-20 104.4 210 36.2
Prupe.4G188200 Prunus persica HOM05D001593 ORTHO05D010032 5.8e-20 102.1 207 35.3
FAN25G3755 Fragaria x ananassa HOM05D001593 ORTHO05D010032 7.5e-20 101.7 210 35.7
RcHm_v2.0_Chr5g0035111 Rosa chinensis HOM05D001593 ORTHO05D010032 7.5e-20 101.7 84 63.1
MD11G1238400 Malus domestica HOM05D001593 ORTHO05D010032 1.7e-19 100.5 99 54.5
PSO832G0778 Papaver somniferum HOM05D001593 ORTHO05D010032 4.9e-19 99.0 213 30.5
MD03G1220500 Malus domestica HOM05D001593 ORTHO05D010032 8.3e-19 98.2 205 32.7
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 1.4e-18 97.4 208 30.8
PGR031G2663 Punica granatum HOM05D001593 ORTHO05D010032 1.3e-16 90.9 214 31.8
CDE05G2529 Ceratophyllum demersum HOM05D001593 ORTHO05D010032 3.9e-16 89.4 178 34.3
MELO3C032197.2 Cucumis melo HOM05D001593 ORTHO05D010032 9.5e-15 84.7 59 61.0
MD03G1220400 Malus domestica HOM05D001593 ORTHO05D010032 1.1e-13 81.3 205 30.2
FAN21G2072 Fragaria x ananassa HOM05D001593 ORTHO05D010032 8.9e-13 78.2 61 60.7
Sed0013638 Sechium edule HOM05D001593 ORTHO05D010032 1.2e-12 77.8 220 28.2
SEGI_19703 Sequoiadendron giganteum HOM05D001593 ORTHO05D010032 2.1e-09 67.0 211 24.6
HPP92_000927 Vanilla planifolia HOM05D001593 ORTHO05D010032 4.6e-09 65.9 188 24.5
MSTRG.9858 Avicennia marina HOM05D000322 ORTHO05D000186 1.9e-07 60.5 63 41.3
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 4.3e-07 59.3 47 51.1
MSTRG.9855 Avicennia marina HOM05D000322 ORTHO05D000186 9.6e-07 58.2 60 41.7
Lj3A826T81 Lonicera japonica HOM05D000322 ORTHO05D000186 9.6e-07 58.2 63 41.3
Lj3A826T83 Lonicera japonica HOM05D000322 ORTHO05D000186 1.2e-06 57.8 63 39.7
PGR031G1022 Punica granatum HOM05D000322 ORTHO05D000186 1.2e-06 57.8 63 39.7
SalBow2G0226 Salvia bowleyana HOM05D000322 ORTHO05D000186 1.2e-06 57.8 51 49.0
SalBow2G1859 Salvia bowleyana HOM05D000322 ORTHO05D000186 1.6e-06 57.4 51 49.0
MSTRG.4174 Avicennia marina HOM05D000322 ORTHO05D000186 2.1e-06 57.0 60 43.3
Lj3A826T82 Lonicera japonica HOM05D000322 ORTHO05D000186 2.1e-06 57.0 63 39.7
Lj6C683T15 Lonicera japonica HOM05D000322 ORTHO05D000186 2.1e-06 57.0 60 40.0
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 2.8e-06 56.6 66 33.3
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 2.8e-06 56.6 68 35.3
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 3.6e-06 56.2 53 50.9
Dinv29696 Davidia involucrata HOM05D000322 ORTHO05D000186 3.6e-06 56.2 63 41.3
Oeu016263.1 Olea europaea HOM05D000322 ORTHO05D000186 3.6e-06 56.2 51 47.1
Rhsim04G0241800 Rhododendron simsii HOM05D000322 ORTHO05D000186 3.6e-06 56.2 67 37.3
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.6e-06 56.2 46 47.8
HPP92_006905 Vanilla planifolia HOM05D000322 ORTHO05D000186 3.6e-06 56.2 73 37.0
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 3.6e-06 56.2 58 43.1
MELO3C003859.2 Cucumis melo HOM05D001593 ORTHO05D002007 4.7e-06 55.8 191 24.6
Hma1.2p1_0078F.1_g040230 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 4.7e-06 55.8 60 40.0
Lj6A683T52 Lonicera japonica HOM05D000322 ORTHO05D000186 4.7e-06 55.8 63 41.3
SEGI_40878 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 4.7e-06 55.8 58 37.9
Cc03_g01280 Coffea canephora HOM05D000322 ORTHO05D000186 6.2e-06 55.5 57 47.4
Lj3A826T84 Lonicera japonica HOM05D000322 ORTHO05D000186 6.2e-06 55.5 63 39.7
MBI03_g42550_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 6.2e-06 55.5 54 40.7
Eucgr.H03792 Eucalyptus grandis HOM05D000322 ORTHO05D000186 8.1e-06 55.1 61 41.0
SEGI_23044 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 8.1e-06 55.1 68 32.4
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 8.1e-06 55.1 51 41.2


User provided reference genes

Program Settings