Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027789 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 2.3e-41 171.8 85 100.0
CSS0022488 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 2.3e-33 145.2 86 83.7
CSS0038405 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 8.1e-31 136.7 86 82.6
CSS0013857 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D108889 3.9e-25 117.9 85 76.5
GSVIVG01016262001 Vitis vinifera HOM05D002588 ORTHO05D002979 1.6e-15 85.9 68 64.7
Thecc.10G075700 Theobroma cacao HOM05D002588 ORTHO05D002979 4.8e-15 84.3 68 64.7
Eucgr.G02844 Eucalyptus grandis HOM05D002588 ORTHO05D002979 8.2e-15 83.6 69 62.3
Ciclev10031426m.g Citrus clementina HOM05D002588 ORTHO05D002979 2.4e-14 82.0 68 64.7
THA.LOC104824227 Tarenaya hassleriana HOM05D002588 ORTHO05D002979 2.4e-14 82.0 68 61.8
Dinv31314 Davidia involucrata HOM05D002588 ORTHO05D002979 3.1e-14 81.6 69 62.3
Gohir.D05G296500 Gossypium hirsutum HOM05D002588 ORTHO05D002979 3.1e-14 81.6 68 61.8
Gorai.009G313500 Gossypium raimondii HOM05D002588 ORTHO05D002979 3.1e-14 81.6 68 61.8
Gohir.A05G296600 Gossypium hirsutum HOM05D002588 ORTHO05D002979 4.1e-14 81.3 68 63.2
Atru.chr12.789 Acer truncatum HOM05D002588 ORTHO05D002979 5.3e-14 80.9 68 61.8
Dinv36428 Davidia involucrata HOM05D002588 ORTHO05D002979 5.3e-14 80.9 69 60.9
Manes.13G137300 Manihot esculenta HOM05D002588 ORTHO05D002979 5.3e-14 80.9 78 56.4
QL08p055600 Quercus lobata HOM05D002588 ORTHO05D002979 5.3e-14 80.9 69 60.9
Manes.07G099100 Manihot esculenta HOM05D002588 ORTHO05D002979 6.9e-14 80.5 78 55.1
CSS0017262 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 9.0e-14 80.1 69 60.9
Duzib106G0610 Durio zibethinus HOM05D002588 ORTHO05D002979 9.0e-14 80.1 68 61.8
PSO063G6954 Papaver somniferum HOM05D002588 ORTHO05D002979 9.0e-14 80.1 68 60.3
PSO339G4981 Papaver somniferum HOM05D002588 ORTHO05D002979 9.0e-14 80.1 68 60.3
vmacro07065 Vaccinium macrocarpon HOM05D002588 ORTHO05D002979 9.0e-14 80.1 82 57.3
Actinidia06763 Actinidia chinensis HOM05D002588 ORTHO05D002979 2.0e-13 79.0 74 58.1
Cpa.g.sc546.4 Carica papaya HOM05D002588 ORTHO05D043530 2.0e-13 79.0 68 58.8
FvH4_7g19320 Fragaria vesca HOM05D002588 ORTHO05D002979 2.0e-13 79.0 77 55.8
FAN06G4612 Fragaria x ananassa HOM05D002588 ORTHO05D002979 2.0e-13 79.0 77 55.8
FAN10G2679 Fragaria x ananassa HOM05D002588 ORTHO05D002979 2.0e-13 79.0 77 55.8
FAN10G3309 Fragaria x ananassa HOM05D002588 ORTHO05D002979 2.0e-13 79.0 77 55.8
Potri.008G038700 Populus trichocarpa HOM05D002588 ORTHO05D002979 2.0e-13 79.0 69 62.3
THA.LOC104825232 Tarenaya hassleriana HOM05D002588 ORTHO05D002979 2.0e-13 79.0 68 61.8
TAR636G1105 Trochodendron aralioides HOM05D002588 ORTHO05D002979 2.6e-13 78.6 69 60.9
Aqoxy1G01222 Aquilegia oxysepala HOM05D002588 ORTHO05D002979 4.5e-13 77.8 69 58.0
TWI63G0459 Tripterygium wilfordii HOM05D002588 ORTHO05D002979 4.5e-13 77.8 69 60.9
CiPaw.01G271900 Carya illinoinensis HOM05D002588 ORTHO05D002979 7.7e-13 77.0 69 55.1
RcHm_v2.0_Chr1g0363201 Rosa chinensis HOM05D002588 ORTHO05D002979 1.0e-12 76.6 77 54.5
Cfa001652 Carpinus fangiana HOM05D002588 ORTHO05D002979 1.3e-12 76.3 69 59.4
MD07G1173400 Malus domestica HOM05D002588 ORTHO05D002979 1.3e-12 76.3 68 60.3
CDE07G1005 Ceratophyllum demersum HOM05D002588 ORTHO05D002979 1.7e-12 75.9 77 54.5
MD01G1107800 Malus domestica HOM05D002588 ORTHO05D002979 1.7e-12 75.9 68 60.3
Psat6g183000 Pisum sativum HOM05D002588 ORTHO05D002979 1.7e-12 75.9 68 55.9
Potri.010G223500 Populus trichocarpa HOM05D002588 ORTHO05D002979 1.7e-12 75.9 69 58.0
Hund12064 Selenicereus undatus HOM05D002588 ORTHO05D002979 1.7e-12 75.9 55 67.3
Sopen05g034540 Solanum pennellii HOM05D002588 ORTHO05D002979 1.7e-12 75.9 69 58.0
PGSC0003DMG400023340 Solanum tuberosum HOM05D002588 ORTHO05D002979 1.7e-12 75.9 69 58.0
CANSAT56G3551 Cannabis sativa HOM05D002588 ORTHO05D002979 2.2e-12 75.5 68 57.4
Os04g0693000 Oryza sativa ssp. japonica HOM05D002588 ORTHO05D002979 2.2e-12 75.5 70 60.0
Peaxi162Scf01175g00017 Petunia axillaris HOM05D002588 ORTHO05D002979 2.9e-12 75.1 56 66.1
Prupe.2G212600 Prunus persica HOM05D002588 ORTHO05D002979 2.9e-12 75.1 77 57.1
Ca_10565_v3 Cicer arietinum L. HOM05D002588 ORTHO05D002979 3.8e-12 74.7 68 54.4
Haze_16882 Corylus avellana HOM05D002588 ORTHO05D002979 3.8e-12 74.7 69 59.4
PGR142G4191 Punica granatum HOM05D002588 ORTHO05D002979 3.8e-12 74.7 55 67.3
Sabra10G0172900 Salix brachista HOM05D002588 ORTHO05D002979 3.8e-12 74.7 73 54.8
Lalb_Chr21g0306131 Lupinus albus HOM05D002588 ORTHO05D002979 5.0e-12 74.3 77 54.5
Sed0015823 Sechium edule HOM05D002588 ORTHO05D002979 5.0e-12 74.3 78 55.1
CAN.G694.88 Capsicum annuum HOM05D002588 ORTHO05D002979 6.5e-12 73.9 69 55.1
DCAR_006431 Daucus carota HOM05D002588 ORTHO05D002979 6.5e-12 73.9 69 58.0
Nitab4.5_0000476g0020 Nicotiana tabacum HOM05D002588 ORTHO05D002979 6.5e-12 73.9 69 56.5
Nitab4.5_0004212g0010 Nicotiana tabacum HOM05D002588 ORTHO05D002979 6.5e-12 73.9 69 56.5
Aa31LG2G8180 Aethionema arabicum HOM05D002588 ORTHO05D002979 8.5e-12 73.6 68 55.9
ATR0048G062 Amborella trichopoda HOM05D002588 ORTHO05D002979 8.5e-12 73.6 78 56.4
AL5G10810 Arabidopsis lyrata HOM05D002588 ORTHO05D002979 8.5e-12 73.6 68 55.9
FAN01G2618 Fragaria x ananassa HOM05D002588 ORTHO05D002979 8.5e-12 73.6 80 53.8
FAN03G2887 Fragaria x ananassa HOM05D002588 ORTHO05D002979 8.5e-12 73.6 80 53.8
SGA_v2.0_scaffold625G53243 Striga asiatica HOM05D002588 ORTHO05D002979 8.5e-12 73.6 69 59.4
AT2G01720 Arabidopsis thaliana HOM05D002588 ORTHO05D002979 1.1e-11 73.2 68 55.9
MBI07_g26023_MAGBIO Magnolia biondii HOM05D002588 ORTHO05D002979 1.1e-11 73.2 69 58.0
Medtr1g094870 Medicago truncatula HOM05D002588 ORTHO05D002979 1.1e-11 73.2 68 52.9
Sp2g13170 Schrenkiella parvula HOM05D002588 ORTHO05D002979 1.1e-11 73.2 68 57.4
HPP92_025837 Vanilla planifolia HOM05D002588 ORTHO05D002979 1.1e-11 73.2 70 55.7
BcaB07g30377 Brassica carinata HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
BcaC03g17070 Brassica carinata HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
C02p49880 Brassica napus HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
BolC2t11067H Brassica oleracea HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
BraA02t08245Z Brassica rapa HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
Carub.0005s0066 Capsella rubella HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 55.9
Oeu033862.1 Olea europaea HOM05D002588 ORTHO05D002979 1.4e-11 72.8 68 58.8
arahy.Tifrunner.gnm1.ann1.9IJI7K Arachis hypogaea HOM05D002588 ORTHO05D002979 1.9e-11 72.4 68 55.9
arahy.Tifrunner.gnm1.ann1.A8DF3L Arachis hypogaea HOM05D002588 ORTHO05D002979 1.9e-11 72.4 68 55.9
CARHR144280 Cardamine hirsuta HOM05D002588 ORTHO05D002979 1.9e-11 72.4 68 54.4
MELO3C012425.2 Cucumis melo HOM05D002588 ORTHO05D002979 1.9e-11 72.4 77 53.2
Thhalv10004162m.g Eutrema salsugineum HOM05D002588 ORTHO05D002979 1.9e-11 72.4 68 54.4
TPR.G1912 Trifolium pratense HOM05D002588 ORTHO05D002979 1.9e-11 72.4 68 52.9
BcaC06g31282 Brassica carinata HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
BcaC06g34132 Brassica carinata HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
A06p44160 Brassica napus HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
C07p32340 Brassica napus HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
BolC7t43770H Brassica oleracea HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
BraA06t27291Z Brassica rapa HOM05D002588 ORTHO05D002979 2.5e-11 72.0 68 54.4
ClCG05G021060 Citrullus lanatus HOM05D002588 ORTHO05D002979 2.5e-11 72.0 77 53.2
Sed0026139 Sechium edule HOM05D002588 ORTHO05D002979 2.5e-11 72.0 69 58.0
Zm00001eb076610 Zea mays HOM05D002588 ORTHO05D002979 2.5e-11 72.0 70 55.7
Cc02_g11270 Coffea canephora HOM05D002588 ORTHO05D002979 3.2e-11 71.6 68 57.4
SGA_v2.0_scaffold51G18688 Striga asiatica HOM05D002588 ORTHO05D002979 3.2e-11 71.6 68 57.4
A02p32280 Brassica napus HOM05D002588 ORTHO05D002979 4.2e-11 71.2 68 54.4
Phvul.007G095500 Phaseolus vulgaris HOM05D002588 ORTHO05D002979 4.2e-11 71.2 68 54.4
VMungo0720G1406 Vigna mungo HOM05D002588 ORTHO05D002979 4.2e-11 71.2 68 54.4
Glyma.10G210300 Glycine max HOM05D002588 ORTHO05D002979 5.5e-11 70.9 77 50.6
CsaV3_5G036240 Cucumis sativus L. HOM05D002588 ORTHO05D002979 9.4e-11 70.1 77 50.6
MSTRG.8141 Avicennia marina HOM05D002588 ORTHO05D002979 1.2e-10 69.7 69 55.1
Glyma.20G180300 Glycine max HOM05D002588 ORTHO05D002979 1.2e-10 69.7 68 52.9
Migut.F01749 Erythranthe guttata HOM05D002588 ORTHO05D002979 1.6e-10 69.3 69 52.2
Lsat_1_v5_gn_2_112401 Lactuca sativa HOM05D002588 ORTHO05D002979 2.1e-10 68.9 69 50.7
Rhsim03G0119400 Rhododendron simsii HOM05D002588 ORTHO05D002979 2.1e-10 68.9 83 50.6
SalBow3G4494 Salvia bowleyana HOM05D002588 ORTHO05D002979 2.1e-10 68.9 68 58.8
Lj5g0026132 Lotus japonicus HOM05D002588 ORTHO05D002979 2.7e-10 68.6 68 55.9
Ah.16g106390 Amaranthus hybridus HOM05D002588 ORTHO05D002979 4.6e-10 67.8 69 52.2
Sabra08G0026400 Salix brachista HOM05D002588 ORTHO05D002979 4.6e-10 67.8 83 50.6
HanXRQChr14g0456811 Helianthus annuus HOM05D002588 ORTHO05D002979 1.0e-09 66.6 69 52.2
Gohir.A10G205100 Gossypium hirsutum HOM05D002588 ORTHO05D002979 1.4e-09 66.2 68 54.4
Gohir.D10G213300 Gossypium hirsutum HOM05D002588 ORTHO05D002979 1.8e-09 65.9 68 52.9
Gorai.011G238700 Gossypium raimondii HOM05D002588 ORTHO05D002979 1.8e-09 65.9 68 52.9
AUR62018243 Chenopodium quinoa HOM05D002588 ORTHO05D002979 3.0e-09 65.1 68 51.5
unitig_22.g5957 Utricularia gibba HOM05D002588 ORTHO05D002979 3.0e-09 65.1 78 51.3
Lalb_Chr02g0142241 Lupinus albus HOM05D002588 ORTHO05D002979 3.9e-09 64.7 77 48.1
AUR62037764 Chenopodium quinoa HOM05D002588 ORTHO05D002979 5.1e-09 64.3 68 50.0
ECA238G1708 Erigeron canadensis HOM05D002588 ORTHO05D002979 1.9e-08 62.4 69 47.8
Prupe.5G006900 Prunus persica HOM05D002588 ORTHO05D002979 4.3e-08 61.2 70 48.6
Sc09g0006230 Simmondsia chinensis HOM05D002588 ORTHO05D002979 9.7e-08 60.1 35 77.1
Nitab4.5_0001756g0200 Nicotiana tabacum HOM05D002588 ORTHO05D002979 2.2e-07 58.9 74 45.9
arahy.Tifrunner.gnm1.ann1.6K40U8 Arachis hypogaea HOM05D002588 ORTHO05D002979 2.8e-07 58.5 69 49.3
arahy.Tifrunner.gnm1.ann1.Z621FR Arachis hypogaea HOM05D002588 ORTHO05D002979 2.8e-07 58.5 69 49.3
MSTRG.999 Avicennia marina HOM05D002588 ORTHO05D002979 2.8e-07 58.5 68 47.1
MD06G1005600 Malus domestica HOM05D002588 ORTHO05D002979 2.8e-07 58.5 70 45.7
CDE04G2806 Ceratophyllum demersum HOM05D002588 ORTHO05D002979 3.7e-07 58.2 69 43.5
Migut.C00376 Erythranthe guttata HOM05D002588 ORTHO05D002979 3.7e-07 58.2 70 45.7
Glyma.04G015300 Glycine max HOM05D002588 ORTHO05D002979 4.8e-07 57.8 70 47.1
Oeu016872.1 Olea europaea HOM05D002588 ORTHO05D002979 4.8e-07 57.8 70 45.7
Psat5g008880 Pisum sativum HOM05D002588 ORTHO05D002979 4.8e-07 57.8 70 47.1
GSVIVG01013410001 Vitis vinifera HOM05D002588 ORTHO05D002979 4.8e-07 57.8 70 44.3
CAN.G1330.1 Capsicum annuum HOM05D002588 ORTHO05D002979 6.3e-07 57.4 70 45.7
PGSC0003DMG400009917 Solanum tuberosum HOM05D002588 ORTHO05D002979 6.3e-07 57.4 57 52.6
AUR62035156 Chenopodium quinoa HOM05D002588 ORTHO05D002979 8.2e-07 57.0 70 47.1
Ca_15393_v3 Cicer arietinum L. HOM05D002588 ORTHO05D002979 8.2e-07 57.0 70 48.6
Ca_29626_v3 Cicer arietinum L. HOM05D002588 ORTHO05D002979 8.2e-07 57.0 70 48.6
Glyma.06G015400 Glycine max HOM05D002588 ORTHO05D002979 8.2e-07 57.0 70 47.1
Hund01794 Selenicereus undatus HOM05D002588 ORTHO05D002979 1.1e-06 56.6 70 42.9
Dinv38453 Davidia involucrata HOM05D002588 ORTHO05D002979 1.4e-06 56.2 57 47.4
SalBow7G1725 Salvia bowleyana HOM05D002588 ORTHO05D002979 1.4e-06 56.2 70 42.9
Phvul.009G007200 Phaseolus vulgaris HOM05D002588 ORTHO05D002979 1.8e-06 55.8 70 45.7
VMungo1309G2669 Vigna mungo HOM05D002588 ORTHO05D002979 2.4e-06 55.5 70 42.9
Cfa014123 Carpinus fangiana HOM05D002588 ORTHO05D002979 3.1e-06 55.1 70 44.3
Haze_22845 Corylus avellana HOM05D002588 ORTHO05D002979 3.1e-06 55.1 70 44.3
DCAR_013937 Daucus carota HOM05D002588 ORTHO05D002979 3.1e-06 55.1 68 44.1
Peaxi162Scf00680g00414 Petunia axillaris HOM05D002588 ORTHO05D002979 3.1e-06 55.1 70 45.7
THA.LOC104811998 Tarenaya hassleriana HOM05D002588 ORTHO05D002979 3.1e-06 55.1 66 45.5
CAN.G229.20 Capsicum annuum HOM05D002588 ORTHO05D002979 4.1e-06 54.7 61 52.5
CDE08G1360 Ceratophyllum demersum HOM05D002588 ORTHO05D002979 4.1e-06 54.7 56 46.4
Solyc04g082670.4 Solanum lycopersicum HOM05D002588 ORTHO05D002979 4.1e-06 54.7 57 50.9
Sopen04g036300 Solanum pennellii HOM05D002588 ORTHO05D002979 4.1e-06 54.7 57 50.9
TPR.G38095 Trifolium pratense HOM05D002588 ORTHO05D002979 4.1e-06 54.7 70 47.1
EL10Ac1g01896 Beta vulgaris HOM05D002588 ORTHO05D002979 5.3e-06 54.3 70 45.7
Lalb_Chr08g0246501 Lupinus albus HOM05D002588 ORTHO05D002979 5.3e-06 54.3 70 47.1
Mapoly0008s0275 Marchantia polymorpha HOM05D002588 ORTHO05D002979 5.3e-06 54.3 70 44.3
arahy.Tifrunner.gnm1.ann1.S816BA Arachis hypogaea HOM05D002588 ORTHO05D002979 6.9e-06 53.9 72 45.8
CSS0035039 Camellia sinensis var. sinensis HOM05D002588 ORTHO05D002979 6.9e-06 53.9 56 48.2
Eucgr.F01802 Eucalyptus grandis HOM05D002588 ORTHO05D002979 6.9e-06 53.9 76 39.5
Medtr3g115980 Medicago truncatula HOM05D002588 ORTHO05D002979 6.9e-06 53.9 70 45.7
TAR628G0795 Trochodendron aralioides HOM05D002588 ORTHO05D002979 9.1e-06 53.5 70 42.9


User provided reference genes

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