Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.6e-35 151.0 73 100.0
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 4.5e-22 107.5 64 82.8
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 3.8e-21 104.4 65 75.4
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 7.2e-20 100.1 65 73.8
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 9.5e-20 99.8 64 79.7
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.8e-19 98.2 68 69.1
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.8e-18 95.5 68 67.6
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 6.8e-18 93.6 68 67.6
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 8.9e-18 93.2 68 66.2
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 1.2e-17 92.8 69 66.7
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.5e-17 92.4 68 66.2
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.5e-17 92.4 68 66.2
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 3.4e-17 91.3 73 61.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.7e-16 89.0 71 63.4
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.7e-16 87.8 70 58.6
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 3.7e-16 87.8 70 64.3
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.7e-16 87.8 71 64.8
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 4.9e-16 87.4 65 63.1
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 4.9e-16 87.4 71 64.8
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 2.4e-15 85.1 65 63.1
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.1e-15 84.3 65 61.5
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.0e-15 83.6 62 64.5
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 7.0e-15 83.6 64 62.5
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 7.0e-15 83.6 64 62.5
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 9.2e-15 83.2 69 62.3
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 9.2e-15 83.2 62 62.9
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.2e-14 82.8 64 62.5
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.0e-14 82.0 69 59.4
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 2.0e-14 82.0 65 63.1
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.0e-14 82.0 62 62.9
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.6e-14 80.9 69 58.0
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 7.8e-14 80.1 46 80.4
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.0e-13 79.7 69 55.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 1.5e-12 75.9 75 52.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.5e-12 75.9 72 58.3
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.9e-12 75.5 78 50.0
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 5.6e-12 73.9 43 79.1
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.2e-11 72.8 68 52.9
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 1.6e-11 72.4 72 54.2
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.6e-11 72.4 65 55.4
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.1e-11 72.0 72 50.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 2.8e-11 71.6 65 52.3
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.8e-11 71.6 75 48.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 2.8e-11 71.6 75 50.7
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 4.7e-11 70.9 66 50.0
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 6.1e-11 70.5 70 52.9
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.8e-10 68.9 79 48.1
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.3e-10 68.6 76 48.7
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.3e-10 68.6 78 51.3
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 3.1e-10 68.2 63 55.6
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.1e-10 68.2 57 57.9
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 3.1e-10 68.2 57 57.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.0e-10 67.8 57 57.9
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 4.0e-10 67.8 71 52.1
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.2e-10 67.4 96 42.7
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 5.2e-10 67.4 66 54.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 8.9e-10 66.6 70 52.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 8.9e-10 66.6 72 50.0
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.2e-09 66.2 82 40.2
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 1.5e-09 65.9 59 55.9
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 2.0e-09 65.5 66 54.5
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 2.0e-09 65.5 67 52.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 2.0e-09 65.5 67 55.2
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.6e-09 65.1 58 53.4
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 3.4e-09 64.7 66 54.5
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.4e-09 64.7 29 93.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 3.4e-09 64.7 65 53.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 4.4e-09 64.3 69 46.4
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 4.4e-09 64.3 69 46.4
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 4.4e-09 64.3 69 46.4
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.4e-09 64.3 75 46.7
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 4.4e-09 64.3 43 72.1
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 5.8e-09 63.9 61 54.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 7.5e-09 63.5 70 48.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 9.8e-09 63.2 69 44.9
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 9.8e-09 63.2 69 44.9
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.8e-09 63.2 71 45.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 9.8e-09 63.2 65 46.2
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.3e-08 62.8 66 53.0
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-08 62.4 67 47.8
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.7e-08 62.4 67 47.8
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 2.2e-08 62.0 57 54.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 2.2e-08 62.0 49 61.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-08 62.0 65 44.6
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 2.2e-08 62.0 54 59.3
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 2.9e-08 61.6 69 44.9
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 3.7e-08 61.2 42 69.0
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 3.7e-08 61.2 67 47.8
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 3.7e-08 61.2 69 53.6
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.7e-08 61.2 65 52.3
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 8.3e-08 60.1 31 80.6
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.1e-07 59.7 32 81.2
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.4e-07 59.3 70 45.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 2.4e-07 58.5 69 43.5
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.4e-07 58.5 69 43.5
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.4e-07 58.5 72 43.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 3.2e-07 58.2 70 42.9
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 3.2e-07 58.2 69 46.4
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 5.4e-07 57.4 69 49.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.4e-07 57.4 69 42.0
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 7.0e-07 57.0 50 56.0
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 9.2e-07 56.6 71 43.7
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 9.2e-07 56.6 46 56.5
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 9.2e-07 56.6 28 82.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 9.2e-07 56.6 28 82.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 9.2e-07 56.6 35 68.6
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.0e-06 55.5 38 65.8
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 3.5e-06 54.7 68 45.6
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 3.5e-06 54.7 65 38.5
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 3.5e-06 54.7 64 46.9
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 4.6e-06 54.3 66 45.5
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-06 54.3 66 45.5
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-06 54.3 33 69.7
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-06 54.3 66 45.5
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.6e-06 54.3 33 69.7
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.6e-06 54.3 66 45.5
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 4.6e-06 54.3 33 69.7
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 4.6e-06 54.3 33 69.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 4.6e-06 54.3 50 54.0


User provided reference genes

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