Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027781 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 0.0e+00 1354.3 691 100.0
Rhsim11G0036600 Rhododendron simsii HOM05D001176 ORTHO05D007019 0.0e+00 1178.7 741 83.5
Duzib205G1840 Durio zibethinus HOM05D001176 ORTHO05D007019 0.0e+00 1163.3 694 84.9
COL.COLO4_11286 Corchorus olitorius HOM05D001176 ORTHO05D007019 0.0e+00 1159.1 691 85.5
GSVIVG01013198001 Vitis vinifera HOM05D001176 ORTHO05D007019 0.0e+00 1154.8 690 85.1
Thecc.03G318700 Theobroma cacao HOM05D001176 ORTHO05D007019 0.0e+00 1150.6 694 84.9
CiPaw.11G075700 Carya illinoinensis HOM05D001176 ORTHO05D007019 0.0e+00 1146.7 691 84.4
Lj9C202G6 Lonicera japonica HOM05D001176 ORTHO05D007019 0.0e+00 1146.3 695 84.5
Cc08_g05630 Coffea canephora HOM05D001176 ORTHO05D007019 0.0e+00 1143.6 698 83.4
Atru.chr8.2633 Acer truncatum HOM05D001176 ORTHO05D007019 0.0e+00 1140.6 698 83.4
HanXRQChr03g0068151 Helianthus annuus HOM05D001176 ORTHO05D007019 0.0e+00 1140.2 691 84.7
DCAR_001483 Daucus carota HOM05D001176 ORTHO05D007019 0.0e+00 1139.8 688 83.0
Gorai.004G178200 Gossypium raimondii HOM05D001176 ORTHO05D007019 0.0e+00 1136.7 694 82.9
Nitab4.5_0000030g0410 Nicotiana tabacum HOM05D001176 ORTHO05D007019 0.0e+00 1135.9 693 83.7
Gohir.D08G170800 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1135.2 694 82.9
TAR375G1104 Trochodendron aralioides HOM05D001176 ORTHO05D007019 0.0e+00 1133.6 694 83.3
Manes.15G189800 Manihot esculenta HOM05D001176 ORTHO05D007019 0.0e+00 1129.0 693 83.4
ECA240G2428 Erigeron canadensis HOM05D001176 ORTHO05D007019 0.0e+00 1128.2 692 82.9
Gohir.A08G149700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 0.0e+00 1127.1 691 82.5
SalBow4G1488 Salvia bowleyana HOM05D001176 ORTHO05D007019 0.0e+00 1125.5 697 81.2
Eucgr.D02557 Eucalyptus grandis HOM05D001176 ORTHO05D007019 0.0e+00 1124.4 697 81.9
CAN.G930.8 Capsicum annuum HOM05D001176 ORTHO05D007019 0.0e+00 1122.8 693 82.5
MSTRG.25741 Avicennia marina HOM05D001176 ORTHO05D007019 0.0e+00 1120.5 698 82.1
MBI04_g37458_MAGBIO Magnolia biondii HOM05D001176 ORTHO05D007019 0.0e+00 1120.1 691 81.3
Lj2g0027044 Lotus japonicus HOM05D001176 ORTHO05D007019 0.0e+00 1118.6 697 82.4
PGR031G2625 Punica granatum HOM05D001176 ORTHO05D007019 0.0e+00 1117.1 703 81.5
Sc21g0000770 Simmondsia chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 695 81.0
Solyc08g075440.4 Solanum lycopersicum HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 693 82.1
Sopen08g024070 Solanum pennellii HOM05D001176 ORTHO05D007019 0.0e+00 1114.4 693 82.1
AUR62017508 Chenopodium quinoa HOM05D001176 ORTHO05D007019 0.0e+00 1114.0 693 81.1
TWI79G0428 Tripterygium wilfordii HOM05D001176 ORTHO05D007019 0.0e+00 1114.0 688 82.8
Prupe.1G077200 Prunus persica HOM05D001176 ORTHO05D007019 0.0e+00 1113.2 693 82.4
Migut.A00530 Erythranthe guttata HOM05D001176 ORTHO05D007019 0.0e+00 1110.5 694 81.3
Oeu039635.2 Olea europaea HOM05D001176 ORTHO05D007019 0.0e+00 1109.4 741 78.0
Haze_02517 Corylus avellana HOM05D001176 ORTHO05D007019 0.0e+00 1107.8 730 78.9
Glyma.11G090100 Glycine max HOM05D001176 ORTHO05D007019 0.0e+00 1106.7 697 81.6
Lsat_1_v5_gn_9_124460 Lactuca sativa HOM05D001176 ORTHO05D007019 0.0e+00 1106.7 706 81.4
Psat2g146720 Pisum sativum HOM05D001176 ORTHO05D007019 0.0e+00 1104.7 697 81.9
Ciclev10011152m.g Citrus clementina HOM05D001176 ORTHO05D007019 0.0e+00 1103.2 687 82.1
Potri.004G236600 Populus trichocarpa HOM05D001176 ORTHO05D007019 0.0e+00 1103.2 696 81.0
Medtr5g025410 Medicago truncatula HOM05D001176 ORTHO05D007019 0.0e+00 1101.7 697 81.8
Sed0008250 Sechium edule HOM05D001176 ORTHO05D007019 0.0e+00 1101.7 692 81.4
CsaV3_4G027950 Cucumis sativus L. HOM05D001176 ORTHO05D007019 0.0e+00 1099.0 696 81.0
RcHm_v2.0_Chr6g0304421 Rosa chinensis HOM05D001176 ORTHO05D007019 0.0e+00 1099.0 687 81.8
EL10Ac5g11241 Beta vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1098.6 693 80.2
Lalb_Chr16g0380331 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1098.2 697 80.8
Phvul.002G121100 Phaseolus vulgaris HOM05D001176 ORTHO05D007019 0.0e+00 1096.6 697 81.2
MELO3C010519.2 Cucumis melo HOM05D001176 ORTHO05D007019 0.0e+00 1094.7 697 81.1
Lalb_Chr09g0324961 Lupinus albus HOM05D001176 ORTHO05D007019 0.0e+00 1093.2 692 80.9
FAN27G0701 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1085.5 687 81.1
FAN20G0920 Fragaria x ananassa HOM05D001176 ORTHO05D007019 0.0e+00 1082.4 687 80.8
Aqoxy7G00899 Aquilegia oxysepala HOM05D001176 ORTHO05D007019 0.0e+00 1081.6 691 80.8
VMungo1215G1610 Vigna mungo HOM05D001176 ORTHO05D007019 0.0e+00 1080.1 697 80.1
Ah.05g167880 Amaranthus hybridus HOM05D001176 ORTHO05D007019 4.7e-312 1074.3 722 75.5
Peaxi162Scf00193g00811 Petunia axillaris HOM05D001176 ORTHO05D007019 4.7e-312 1074.3 693 80.1
Sabra01G0180800 Salix brachista HOM05D001176 ORTHO05D007019 9.5e-312 1072.8 696 79.7
SGA_v2.0_scaffold96G29093 Striga asiatica HOM05D001176 ORTHO05D007019 9.5e-312 1072.8 798 71.3
ClCG11G016030 Citrullus lanatus HOM05D001176 ORTHO05D007019 3.3e-311 1071.2 696 79.5
Nitab4.5_0001333g0050 Nicotiana tabacum HOM05D001176 ORTHO05D007019 1.2e-310 1069.3 693 79.8
Ca_25034_v3 Cicer arietinum L. HOM05D001176 ORTHO05D007019 4.7e-310 1067.4 680 80.7
Gohir.D08G170700 Gossypium hirsutum HOM05D001176 ORTHO05D007019 6.1e-310 1067.0 694 78.8
PSO732G0580 Papaver somniferum HOM05D001176 ORTHO05D007019 1.0e-309 1066.2 692 77.7
PSO675G7478 Papaver somniferum HOM05D001176 ORTHO05D007019 2.6e-308 1061.6 692 78.0
ATR0665G266 Amborella trichopoda HOM05D001176 ORTHO05D007019 5.3e-306 1053.9 693 77.1
Nn1g09379 Nelumbo nucifera HOM05D001176 ORTHO05D007019 9.1e-306 1053.1 691 78.0
THA.LOC104798522 Tarenaya hassleriana HOM05D001176 ORTHO05D007019 3.5e-305 1051.2 691 77.9
TPR.G8989 Trifolium pratense HOM05D001176 ORTHO05D007019 1.9e-303 1045.4 648 82.3
Carub.0001s3008 Capsella rubella HOM05D001176 ORTHO05D007019 1.5e-300 1035.8 691 77.1
AL1G45850 Arabidopsis lyrata HOM05D001176 ORTHO05D007019 3.4e-300 1034.6 693 76.8
AT1G31780 Arabidopsis thaliana HOM05D001176 ORTHO05D007019 4.4e-300 1034.2 691 77.3
Cpa.g.sc90.31 Carica papaya HOM05D001176 ORTHO05D007019 1.1e-298 1029.6 696 76.4
BcaB07g32825 Brassica carinata HOM05D001176 ORTHO05D007019 2.0e-297 1025.4 691 75.8
CARHR031080 Cardamine hirsuta HOM05D001176 ORTHO05D007019 2.7e-297 1025.0 691 76.4
Sp1g27470 Schrenkiella parvula HOM05D001176 ORTHO05D007019 1.7e-296 1022.3 692 76.0
A09p34570 Brassica napus HOM05D001176 ORTHO05D007019 2.9e-296 1021.5 691 75.7
BraA09t38996Z Brassica rapa HOM05D001176 ORTHO05D007019 3.8e-296 1021.1 691 75.7
CDE04G2738 Ceratophyllum demersum HOM05D001176 ORTHO05D007019 1.9e-295 1018.8 692 75.4
BcaC05g27192 Brassica carinata HOM05D001176 ORTHO05D007019 4.2e-295 1017.7 691 75.4
BolC5t31821H Brassica oleracea HOM05D001176 ORTHO05D007019 4.2e-295 1017.7 691 75.4
Thhalv10006980m.g Eutrema salsugineum HOM05D001176 ORTHO05D007019 1.2e-294 1016.1 693 75.8
unitig_748.g7392 Utricularia gibba HOM05D001176 ORTHO05D007019 6.1e-294 1013.8 695 75.1
Aa31LG2G14290 Aethionema arabicum HOM05D001176 ORTHO05D007019 8.0e-294 1013.4 689 75.9
C05p30980 Brassica napus HOM05D001176 ORTHO05D007019 4.4e-292 1007.7 691 75.0
Actinidia01255 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.7e-288 995.7 556 91.0
QL12p003889 Quercus lobata HOM05D001176 ORTHO05D007019 2.5e-279 965.3 1198 49.2
SEGI_32977 Sequoiadendron giganteum HOM05D001176 ORTHO05D007019 1.2e-278 963.0 701 70.8
AUR62015049 Chenopodium quinoa HOM05D001176 ORTHO05D007019 2.3e-272 942.2 693 71.0
Zm00001eb009310 Zea mays HOM05D001176 ORTHO05D007019 1.5e-268 929.5 688 69.5
Oeu014108.2 Olea europaea HOM05D001176 ORTHO05D007019 5.8e-268 927.5 779 66.0
Mapoly0009s0222 Marchantia polymorpha HOM05D001176 ORTHO05D007019 9.6e-255 883.6 720 63.6
HPP92_018761 Vanilla planifolia HOM05D001176 ORTHO05D007019 1.0e-248 863.6 595 74.8
Pp3c2_23210 Physcomitrium patens HOM05D001176 ORTHO05D007019 2.9e-243 845.5 721 60.6
FvH4_2g37280 Fragaria vesca HOM05D001176 ORTHO05D007019 1.5e-239 833.2 538 80.3
PGSC0003DMG400001956 Solanum tuberosum HOM05D001176 ORTHO05D007019 6.4e-235 817.8 512 81.2
FAN15G1703 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.0e-224 783.9 470 83.8
MD13G1243800 Malus domestica HOM05D001176 ORTHO05D007019 1.8e-221 773.1 516 76.2
AagrBONN_evm.TU.Sc2ySwM_362.2951 Anthoceros agrestis HOM05D001176 ORTHO05D007019 2.5e-215 752.7 642 60.3
SMO339G0033 Selaginella moellendorffii HOM05D001176 ORTHO05D007019 5.3e-213 745.0 710 57.7
MD13G1244000 Malus domestica HOM05D001176 ORTHO05D007019 1.4e-197 693.7 420 83.1
Actinidia32787 Actinidia chinensis HOM05D001176 ORTHO05D007019 1.2e-151 541.2 692 50.0
PRCOL_00001869 Prasinoderma coloniale HOM05D001176 ORTHO05D007019 1.4e-144 517.7 702 42.2
Cre13.g587750 Chlamydomonas reinhardtii HOM05D001176 ORTHO05D007019 5.2e-144 515.8 711 42.1
CSS0004945 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.4e-143 513.1 692 48.7
MCO03G158 Micromonas commoda HOM05D001176 ORTHO05D007019 1.1e-136 491.5 700 40.4
Dinv41808 Davidia involucrata HOM05D001176 ORTHO05D007019 1.5e-130 471.1 270 89.6
CSS0012136 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.6e-129 466.5 659 47.0
Dinv41809 Davidia involucrata HOM05D001176 ORTHO05D007019 4.8e-129 466.1 275 87.3
CSS0030107 Camellia sinensis var. sinensis HOM05D001176 ORTHO05D007019 3.4e-127 459.9 232 98.3
CBR_g61503 Chara braunii HOM05D001176 ORTHO05D007019 3.8e-118 429.9 474 50.4
Cc07_g20650 Coffea canephora HOM05D001176 ORTHO05D007019 8.2e-105 385.6 432 53.7
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 2.0e-95 354.4 679 37.6
MD13G1243900 Malus domestica HOM05D001176 ORTHO05D007019 1.7e-94 351.3 244 73.8
vmacro00085 Vaccinium macrocarpon HOM05D001176 ORTHO05D007019 9.4e-85 318.9 295 62.7
FAN15G2248 Fragaria x ananassa HOM05D001176 ORTHO05D007019 1.8e-83 314.7 219 74.4
Hund16023 Selenicereus undatus HOM05D001176 ORTHO05D007019 3.1e-72 277.3 201 74.6
CBR_g61501 Chara braunii HOM05D001176 ORTHO05D007019 3.1e-64 250.8 167 73.1
arahy.Tifrunner.gnm1.ann1.7XHH75 Arachis hypogaea HOM05D001176 ORTHO05D007019 1.5e-50 205.3 143 78.3
arahy.Tifrunner.gnm1.ann1.V0K3WG Arachis hypogaea HOM05D001176 ORTHO05D007019 1.5e-50 205.3 143 78.3
Glyma.01G154450 Glycine max HOM05D001176 ORTHO05D007019 1.3e-41 175.6 125 78.4
Glyma.01G154501 Glycine max HOM05D001176 ORTHO05D007019 1.6e-39 168.7 102 79.4
Os03g0225600 Oryza sativa ssp. japonica HOM05D001176 ORTHO05D007019 6.0e-31 140.2 115 61.7
HPP92_018762 Vanilla planifolia HOM05D001176 ORTHO05D007019 2.6e-26 124.8 84 67.9
CsaV3_4G027980 Cucumis sativus L. HOM05D001176 ORTHO05D007019 4.2e-24 117.5 210 40.0
Glyma.01G154551 Glycine max HOM05D001176 ORTHO05D214389 7.6e-18 96.7 73 68.5
TPR.G11479 Trifolium pratense HOM05D001176 ORTHO05D007019 3.8e-17 94.4 64 78.1
Zm00001eb399610 Zea mays HOM05D001176 ORTHO05D007019 1.6e-15 89.0 147 38.1


User provided reference genes

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