Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027727 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 7.2e-99 364.0 194 100.0
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.8e-55 219.2 188 67.6
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 6.6e-52 208.0 187 65.8
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.5e-51 206.8 183 65.0
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 4.4e-48 195.3 192 62.5
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 1.2e-45 187.2 192 60.4
Actinidia01424 Actinidia chinensis HOM05D003426 ORTHO05D003816 1.0e-44 184.1 192 58.3
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.1e-33 147.5 193 51.8
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.4e-33 147.1 189 51.9
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 8.9e-33 144.4 224 46.9
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.6e-32 142.9 191 48.7
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.2e-31 139.8 188 50.5
GSVIVG01023627001 Vitis vinifera HOM05D003426 ORTHO05D003816 2.0e-24 116.7 191 48.2
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 2.2e-23 113.2 180 46.7
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.2e-23 113.2 184 43.5
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 4.9e-23 112.1 200 41.0
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 5.4e-22 108.6 212 40.6
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 9.2e-22 107.8 214 40.7
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.6e-21 107.1 209 41.6
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 6.0e-21 105.1 196 40.3
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 1.9e-19 100.1 101 61.4
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 4.3e-19 99.0 204 38.2
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 9.6e-19 97.8 215 37.2
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.1e-18 96.7 158 44.3
QL02p093534 Quercus lobata HOM05D003426 ORTHO05D003816 4.7e-18 95.5 197 40.6
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.0e-17 92.4 142 43.0
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 5.2e-17 92.0 174 39.7
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 1.2e-16 90.9 195 35.9
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 1.2e-16 90.9 138 49.3
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 1.5e-16 90.5 164 42.7
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 1.3e-15 87.4 100 53.0
Ciclev10032854m.g Citrus clementina HOM05D003426 ORTHO05D003816 1.7e-15 87.0 195 35.9
QL02p093555 Quercus lobata HOM05D003426 ORTHO05D003816 1.7e-15 87.0 137 48.9
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 3.8e-15 85.9 194 37.1
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 6.4e-15 85.1 143 44.8
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 6.4e-15 85.1 189 39.7
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 8.4e-15 84.7 201 36.8
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 8.4e-15 84.7 145 38.6
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 1.4e-14 84.0 190 40.5
TAR539G0001 Trochodendron aralioides HOM05D003426 ORTHO05D003816 2.4e-14 83.2 190 38.4
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 9.3e-14 81.3 187 35.8
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 9.3e-14 81.3 193 39.4
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 1.2e-13 80.9 152 38.8
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.6e-13 80.5 118 45.8
PGSC0003DMG400011188 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.6e-13 80.5 162 37.7
Sopen07g001820 Solanum pennellii HOM05D003426 ORTHO05D003816 2.1e-13 80.1 141 42.6
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 4.6e-13 79.0 152 38.2
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 4.6e-13 79.0 145 43.4
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 1.0e-12 77.8 135 42.2
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 6.6e-12 75.1 209 33.0
CiPaw.16G108200 Carya illinoinensis HOM05D003426 ORTHO05D003816 8.7e-12 74.7 101 52.5
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 8.7e-12 74.7 127 42.5
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 1.9e-11 73.6 144 41.0
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 2.5e-11 73.2 179 33.5
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 7.3e-11 71.6 137 40.9
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 9.6e-11 71.2 129 42.6
Migut.K00315 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.3e-10 70.9 166 36.7
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 6.2e-10 68.6 185 34.1
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 6.2e-10 68.6 214 37.9
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 1.1e-09 67.8 202 32.2
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 1.1e-09 67.8 123 41.5
CAN.G930.15 Capsicum annuum HOM05D003426 ORTHO05D003816 1.8e-09 67.0 144 38.9
Haze_02287 Corylus avellana HOM05D003426 ORTHO05D003816 4.0e-09 65.9 79 49.4
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 5.3e-09 65.5 153 35.3
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 5.3e-09 65.5 47 72.3
Thhalv10000536m.g Eutrema salsugineum HOM05D012895 ORTHO05D014428 6.9e-09 65.1 104 43.3
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 9.0e-09 64.7 149 37.6
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 9.0e-09 64.7 115 41.7
AT2G24030 Arabidopsis thaliana HOM05D012895 ORTHO05D014428 1.2e-08 64.3 104 42.3
PSO561G0041 Papaver somniferum HOM05D003426 ORTHO05D003816 1.2e-08 64.3 177 35.0
Sp4g02940 Schrenkiella parvula HOM05D012895 ORTHO05D014428 1.2e-08 64.3 145 36.6
GSVIVG01016047001 Vitis vinifera HOM05D003426 ORTHO05D003816 1.2e-08 64.3 105 40.0
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 2.0e-08 63.5 105 40.0
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 2.0e-08 63.5 241 28.2
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 2.0e-08 63.5 195 35.9
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 4.5e-08 62.4 105 41.9
PSO111G0039 Papaver somniferum HOM05D003426 ORTHO05D003816 4.5e-08 62.4 76 52.6
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 5.8e-08 62.0 99 42.4
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 5.8e-08 62.0 99 42.4
AL4G14080 Arabidopsis lyrata HOM05D012895 ORTHO05D014428 7.6e-08 61.6 104 40.4
Ciclev10009572m.g Citrus clementina HOM05D003426 ORTHO05D003816 7.6e-08 61.6 206 31.6
Oeu021311.1 Olea europaea HOM05D003426 ORTHO05D003816 9.9e-08 61.2 151 35.8
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 1.3e-07 60.8 148 33.1
Glyma.17G072700 Glycine max HOM05D003426 ORTHO05D003816 2.2e-07 60.1 111 41.4
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.2e-07 60.1 71 47.9
Solyc07g005710.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 4.9e-07 58.9 103 38.8
ClCG06G012490 Citrullus lanatus HOM05D003426 ORTHO05D003816 1.1e-06 57.8 187 31.0
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 1.4e-06 57.4 128 35.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 2.4e-06 56.6 136 35.3
Nitab4.5_0005869g0090 Nicotiana tabacum HOM05D003426 ORTHO05D003816 3.2e-06 56.2 168 31.0
FAN23G3106 Fragaria x ananassa HOM05D003426 ORTHO05D003816 7.1e-06 55.1 104 34.6
Lsat_1_v5_gn_5_90221 Lactuca sativa HOM05D029854 ORTHO05D003816 7.1e-06 55.1 83 45.8


User provided reference genes

Program Settings