Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.0e-30 136.0 61 100.0
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.5e-15 85.5 42 83.3
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-14 82.0 41 78.0
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.9e-14 81.3 41 75.6
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 7.2e-13 76.6 46 73.9
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 9.4e-13 76.3 41 73.2
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 4.6e-12 73.9 42 76.2
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.0e-11 72.8 41 73.2
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 5.1e-11 70.5 42 71.4
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.0e-10 68.6 36 75.0
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 2.6e-10 68.2 45 62.2
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 2.6e-10 68.2 36 77.8
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 7.4e-10 66.6 38 76.3
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.3e-09 65.9 38 65.8
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.3e-09 65.9 40 67.5
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.2e-09 65.1 38 73.7
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 2.2e-09 65.1 38 73.7
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 2.2e-09 65.1 38 73.7
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.7e-09 64.3 38 68.4
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 4.8e-09 63.9 37 64.9
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 6.3e-09 63.5 33 75.8
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 6.3e-09 63.5 46 58.7
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 6.3e-09 63.5 34 79.4
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 8.2e-09 63.2 37 70.3
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 8.2e-09 63.2 41 61.0
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.1e-08 62.8 38 68.4
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.1e-08 62.8 38 68.4
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 1.1e-08 62.8 38 68.4
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.1e-08 62.8 37 67.6
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.4e-08 62.4 33 75.8
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.4e-08 61.6 36 63.9
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 2.4e-08 61.6 39 66.7
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 3.1e-08 61.2 38 65.8
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 3.1e-08 61.2 33 72.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 4.1e-08 60.8 36 63.9
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 5.3e-08 60.5 38 63.2
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 6.9e-08 60.1 33 72.7
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 6.9e-08 60.1 34 70.6
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 6.9e-08 60.1 34 73.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 9.1e-08 59.7 55 52.7
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 9.1e-08 59.7 35 65.7
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.2e-07 59.3 38 65.8
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.2e-07 59.3 35 65.7
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.5e-07 58.9 33 69.7
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.5e-07 58.9 38 63.2
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 1.5e-07 58.9 38 63.2
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.5e-07 58.9 34 70.6
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 2.0e-07 58.5 33 66.7
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.6e-07 58.2 33 66.7
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 5.9e-07 57.0 39 61.5
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 7.7e-07 56.6 34 70.6
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 1.0e-06 56.2 34 70.6
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 1.3e-06 55.8 36 63.9
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.3e-06 55.8 47 51.1
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 1.3e-06 55.8 36 72.2
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.3e-06 55.8 36 72.2
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.3e-06 55.8 36 72.2
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.7e-06 55.5 38 52.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 1.7e-06 55.5 36 69.4
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.7e-06 55.5 38 60.5
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 2.2e-06 55.1 37 62.2
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.2e-06 55.1 30 66.7
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 2.9e-06 54.7 33 69.7
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 3.8e-06 54.3 32 68.8
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.8e-06 54.3 42 59.5
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 5.0e-06 53.9 49 51.0
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 8.5e-06 53.1 38 60.5
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 8.5e-06 53.1 38 60.5
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 8.5e-06 53.1 35 71.4
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 8.5e-06 53.1 34 61.8


User provided reference genes

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