Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027714 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 4.2e-87 324.7 168 100.0
CSS0019330 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 1.4e-66 256.5 168 83.3
CSS0015807 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 7.6e-65 250.8 164 83.5
CSS0021968 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 1.0e-64 250.4 164 82.9
CSS0033952 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 2.9e-64 248.8 179 77.7
CSS0045520 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 9.7e-52 207.2 158 76.6
CSS0044546 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 2.6e-49 199.1 158 74.7
Actinidia06738 Actinidia chinensis HOM05D000108 ORTHO05D001724 2.4e-42 176.0 158 65.2
Dinv36392 Davidia involucrata HOM05D000108 ORTHO05D001724 1.6e-41 173.3 158 62.7
Cfa001680 Carpinus fangiana HOM05D000108 ORTHO05D001724 2.7e-33 146.0 158 55.7
Ciclev10030573m.g Citrus clementina HOM05D000108 ORTHO05D001724 7.7e-33 144.4 158 53.8
CiPaw.01G268600 Carya illinoinensis HOM05D000108 ORTHO05D001724 3.4e-28 129.0 158 51.9
Gorai.011G236400 Gossypium raimondii HOM05D000108 ORTHO05D001724 8.3e-27 124.4 158 49.4
Gohir.D10G210800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 1.4e-26 123.6 158 49.4
MD01G1103200 Malus domestica HOM05D000108 ORTHO05D001724 1.8e-26 123.2 156 51.9
MD07G1169900 Malus domestica HOM05D000108 ORTHO05D001724 3.1e-26 122.5 156 51.9
TWI63G0200 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 7.0e-26 121.3 158 48.1
RcHm_v2.0_Chr1g0362591 Rosa chinensis HOM05D000108 ORTHO05D001724 9.1e-26 120.9 157 48.4
QL08p054367 Quercus lobata HOM05D000108 ORTHO05D001724 2.7e-25 119.4 150 50.7
QL08p054496 Quercus lobata HOM05D000108 ORTHO05D001724 2.7e-25 119.4 150 50.7
GSVIVG01016220001 Vitis vinifera HOM05D003228 ORTHO05D001724 2.7e-25 119.4 158 50.6
MBI18_g01552_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 4.5e-25 118.6 138 52.9
FAN03G2395 Fragaria x ananassa HOM05D000108 ORTHO05D001724 7.7e-25 117.9 158 48.1
Cpa.g.sc53.131 Carica papaya HOM05D000108 ORTHO05D001724 1.0e-24 117.5 155 50.3
FvH4_7g18790 Fragaria vesca HOM05D000108 ORTHO05D001724 1.3e-24 117.1 158 48.1
FAN06G1146 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.3e-24 117.1 158 48.1
FAN06G2234 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.3e-24 117.1 158 48.1
FAN10G1740 Fragaria x ananassa HOM05D000108 ORTHO05D001724 8.5e-24 114.4 158 46.2
FAN10G3052 Fragaria x ananassa HOM05D000108 ORTHO05D001724 8.5e-24 114.4 158 46.2
Prupe.2G208800 Prunus persica HOM05D000108 ORTHO05D001724 1.5e-23 113.6 166 48.2
HanXRQChr08g0218531 Helianthus annuus HOM05D000108 ORTHO05D001724 2.5e-23 112.8 158 44.9
Oeu007409.1 Olea europaea HOM05D000108 ORTHO05D001724 2.5e-23 112.8 156 48.1
FAN01G0155 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.2e-22 110.5 158 47.5
CANSAT56G2924 Cannabis sativa HOM05D000108 ORTHO05D001724 2.7e-22 109.4 158 44.3
Cc02_g10930 Coffea canephora HOM05D000108 ORTHO05D001724 2.7e-22 109.4 161 45.3
ECA233G5278 Erigeron canadensis HOM05D000108 ORTHO05D001724 3.6e-22 109.0 158 43.0
Manes.05G201200 Manihot esculenta HOM05D000108 ORTHO05D001724 1.0e-21 107.5 157 47.8
PSO063G0754 Papaver somniferum HOM05D000108 ORTHO05D001724 4.0e-21 105.5 150 43.3
PSO339G0808 Papaver somniferum HOM05D000108 ORTHO05D001724 4.0e-21 105.5 150 43.3
ClCG08G007710 Citrullus lanatus HOM05D000108 ORTHO05D001724 2.2e-19 99.8 179 40.2
Aqoxy1G01143 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 3.7e-19 99.0 99 52.5
Potri.010G227000 Populus trichocarpa HOM05D000108 ORTHO05D001724 3.7e-19 99.0 141 46.8
Lj2A20G44 Lonicera japonica HOM05D000108 ORTHO05D001724 8.3e-19 97.8 141 42.6
CAN.G321.63 Capsicum annuum HOM05D000108 ORTHO05D001724 2.0e-17 93.2 200 36.0
Eucgr.J01062 Eucalyptus grandis HOM05D000108 ORTHO05D001724 2.0e-17 93.2 149 40.9
Gohir.A10G202600 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.7e-17 92.8 192 37.5
Duzib114G0930 Durio zibethinus HOM05D000108 ORTHO05D001724 5.9e-17 91.7 98 54.1
Sed0027974 Sechium edule HOM05D000108 ORTHO05D001724 7.7e-17 91.3 158 39.9
TAR636G1445 Trochodendron aralioides HOM05D000108 ORTHO05D001724 1.3e-16 90.5 107 50.5
MELO3C019823.2 Cucumis melo HOM05D000108 ORTHO05D001724 2.3e-16 89.7 158 41.1
Solyc11g008350.2 Solanum lycopersicum HOM05D000108 ORTHO05D001724 3.8e-16 89.0 154 39.0
Gohir.A05G411200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 1.9e-15 86.7 156 41.0
Haze_16873 Corylus avellana HOM05D000108 ORTHO05D001724 3.3e-15 85.9 73 63.0
MSTRG.9150 Avicennia marina HOM05D000108 ORTHO05D001724 5.6e-15 85.1 130 42.3
Peaxi162Scf00145g01216 Petunia axillaris HOM05D000108 ORTHO05D001724 5.6e-15 85.1 199 33.2
COL.COLO4_33386 Corchorus olitorius HOM05D000108 ORTHO05D001724 7.3e-15 84.7 98 52.0
CsaV3_6G036700 Cucumis sativus L. HOM05D000108 ORTHO05D001724 9.5e-15 84.3 157 39.5
Thecc.10G083400 Theobroma cacao HOM05D000108 ORTHO05D001724 1.0e-13 80.9 85 55.3
Sopen11g004160 Solanum pennellii HOM05D000108 ORTHO05D001724 2.3e-13 79.7 154 37.0
Thhalv10010108m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 3.0e-13 79.3 166 36.7
CARHR164850 Cardamine hirsuta HOM05D000108 ORTHO05D001724 4.0e-13 79.0 162 37.7
Rhsim03G0115900 Rhododendron simsii HOM05D000108 ORTHO05D001724 4.0e-13 79.0 71 63.4
ATR1126G033 Amborella trichopoda HOM05D000108 ORTHO05D001724 5.2e-13 78.6 164 35.4
BcaB01g00151 Brassica carinata HOM05D000108 ORTHO05D001724 8.9e-13 77.8 166 36.1
Sp5g07550 Schrenkiella parvula HOM05D000108 ORTHO05D001724 8.9e-13 77.8 165 36.4
A09p47810 Brassica napus HOM05D000108 ORTHO05D001724 1.2e-12 77.4 166 36.1
BraA09t40238Z Brassica rapa HOM05D000108 ORTHO05D001724 1.2e-12 77.4 166 36.1
AT3G54870 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 1.5e-12 77.0 165 35.8
BcaC07g39771 Brassica carinata HOM05D000108 ORTHO05D001724 1.5e-12 77.0 166 35.5
BolC8t50615H Brassica oleracea HOM05D000108 ORTHO05D001724 1.5e-12 77.0 166 35.5
DCAR_006416 Daucus carota HOM05D000108 ORTHO05D001724 3.4e-12 75.9 99 46.5
C08p30060 Brassica napus HOM05D000108 ORTHO05D001724 4.4e-12 75.5 166 34.9
Sabra10G0175100 Salix brachista HOM05D000108 ORTHO05D001724 2.9e-11 72.8 131 42.0
Nitab4.5_0001450g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001724 8.3e-11 71.2 138 37.0
Nitab4.5_0001659g0160 Nicotiana tabacum HOM05D000108 ORTHO05D001724 8.3e-11 71.2 138 37.0
AL5G35980 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 2.4e-10 69.7 162 35.2
Aa31sc43G100 Aethionema arabicum HOM05D000108 ORTHO05D001724 1.2e-09 67.4 165 35.2
Gohir.D04G004800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.0e-09 66.6 158 35.4
Haze_16855 Corylus avellana HOM05D000108 ORTHO05D001724 3.5e-09 65.9 109 43.1
THA.LOC104825220 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 3.5e-09 65.9 138 35.5
Gorai.012G006000 Gossypium raimondii HOM05D000108 ORTHO05D001724 5.9e-09 65.1 156 34.6
Lj2A20T48 Lonicera japonica HOM05D010180 ORTHO05D018822 7.8e-09 64.7 57 56.1
Lsat_1_v5_gn_8_20800 Lactuca sativa HOM05D000108 ORTHO05D001724 1.7e-08 63.5 88 46.6
AUR62014259 Chenopodium quinoa HOM05D000108 ORTHO05D001724 5.0e-08 62.0 93 38.7
AUR62038481 Chenopodium quinoa HOM05D000108 ORTHO05D001724 1.1e-07 60.8 90 38.9
PGR044G1521 Punica granatum HOM05D000108 ORTHO05D001724 1.5e-07 60.5 65 50.8
Sc06g0001660 Simmondsia chinensis HOM05D000108 ORTHO05D001724 7.3e-07 58.2 138 34.1
Migut.F01956 Erythranthe guttata HOM05D000108 ORTHO05D001724 9.5e-07 57.8 126 32.5
TAR636G0116 Trochodendron aralioides HOM05D000108 ORTHO05D001724 8.0e-06 54.7 64 48.4


User provided reference genes

Program Settings