Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027711 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 4.5e-101 371.3 195 100.0
CSS0045593 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 3.7e-95 351.7 195 96.4
Cc10_g11460 Coffea canephora HOM05D004490 ORTHO05D005353 4.3e-67 258.5 219 65.3
Hma1.2p1_0363F.1_g136660 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 5.6e-67 258.1 219 65.8
CSS0029963 Camellia sinensis var. sinensis HOM05D004490 ORTHO05D005353 7.3e-67 257.7 219 69.9
Dinv41710 Davidia involucrata HOM05D004490 ORTHO05D005353 1.2e-66 256.9 219 65.3
Duzib177G0006 Durio zibethinus HOM05D004490 ORTHO05D005353 1.5e-64 250.0 219 63.0
MSTRG.1522 Avicennia marina HOM05D004490 ORTHO05D005353 3.4e-64 248.8 220 64.1
DCAR_014360 Daucus carota HOM05D004490 ORTHO05D005353 5.7e-64 248.1 219 64.8
GSVIVG01034483001 Vitis vinifera HOM05D004490 ORTHO05D005353 7.5e-64 247.7 220 63.6
Oeu021013.3 Olea europaea HOM05D004490 ORTHO05D005353 2.9e-63 245.7 219 64.4
Manes.02G191800 Manihot esculenta HOM05D004490 ORTHO05D005353 1.8e-62 243.0 219 61.2
Ciclev10000724m.g Citrus clementina HOM05D004490 ORTHO05D005353 1.2e-61 240.4 222 60.8
Gohir.D13G125400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.2e-61 240.4 220 62.3
Cfa018184 Carpinus fangiana HOM05D004490 ORTHO05D005353 2.0e-61 239.6 219 61.6
ECA234G1973 Erigeron canadensis HOM05D004490 ORTHO05D005353 4.6e-61 238.4 221 61.5
Gohir.A13G121400 Gossypium hirsutum HOM05D004490 ORTHO05D005353 4.6e-61 238.4 220 61.8
Gorai.013G140400 Gossypium raimondii HOM05D004490 ORTHO05D005353 5.9e-61 238.0 220 60.5
Thecc.08G183200 Theobroma cacao HOM05D004490 ORTHO05D005353 7.8e-61 237.7 219 62.6
arahy.Tifrunner.gnm1.ann1.2Y7GNB Arachis hypogaea HOM05D004490 ORTHO05D005353 1.0e-60 237.3 220 63.6
Cpa.g.sc66.44 Carica papaya HOM05D004490 ORTHO05D005353 1.0e-60 237.3 220 64.1
SalBow4G3000 Salvia bowleyana HOM05D004490 ORTHO05D005353 1.3e-60 236.9 222 59.9
SalBow7G0993 Salvia bowleyana HOM05D004490 ORTHO05D005353 1.3e-60 236.9 222 59.9
Lalb_Chr21g0305821 Lupinus albus HOM05D004490 ORTHO05D005353 5.0e-60 235.0 220 61.8
CiPaw.16G061300 Carya illinoinensis HOM05D004490 ORTHO05D005353 8.6e-60 234.2 220 59.5
HanXRQChr10g0290501 Helianthus annuus HOM05D004490 ORTHO05D005353 1.1e-59 233.8 221 62.0
RcHm_v2.0_Chr4g0398261 Rosa chinensis HOM05D004490 ORTHO05D005353 1.5e-59 233.4 220 60.0
Haze_17934 Corylus avellana HOM05D004490 ORTHO05D005353 2.5e-59 232.6 179 68.7
Migut.C01248 Erythranthe guttata HOM05D004490 ORTHO05D005353 2.5e-59 232.6 224 60.3
FAN07G2233 Fragaria x ananassa HOM05D004490 ORTHO05D005353 5.6e-59 231.5 220 60.0
Ca_10614_v3 Cicer arietinum L. HOM05D004490 ORTHO05D005353 7.3e-59 231.1 220 60.9
FAN12G1529 Fragaria x ananassa HOM05D004490 ORTHO05D005353 9.5e-59 230.7 220 59.5
TAR208G0002 Trochodendron aralioides HOM05D004490 ORTHO05D005353 9.5e-59 230.7 223 60.1
Psat6g187400 Pisum sativum HOM05D004490 ORTHO05D005353 1.2e-58 230.3 220 58.6
FvH4_4g06470 Fragaria vesca HOM05D004490 ORTHO05D005353 1.6e-58 229.9 220 59.5
Eucgr.F04124 Eucalyptus grandis HOM05D004490 ORTHO05D005353 2.1e-58 229.6 218 61.5
Lj5g0002115 Lotus japonicus HOM05D004490 ORTHO05D005353 3.6e-58 228.8 220 59.5
Atru.chr12.1269 Acer truncatum HOM05D004490 ORTHO05D005353 4.7e-58 228.4 221 59.3
Lj7A289G25 Lonicera japonica HOM05D004490 ORTHO05D005353 4.7e-58 228.4 239 59.8
MD04G1003500 Malus domestica HOM05D004490 ORTHO05D005353 4.7e-58 228.4 220 57.3
Nn5g27710 Nelumbo nucifera HOM05D004490 ORTHO05D005353 4.7e-58 228.4 217 61.8
Potri.019G083700 Populus trichocarpa HOM05D004490 ORTHO05D005353 4.7e-58 228.4 220 60.9
QL02p033840 Quercus lobata HOM05D004490 ORTHO05D005353 6.2e-58 228.0 218 59.6
FAN17G1649 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.1e-57 227.3 220 59.1
TWI63G0531 Tripterygium wilfordii HOM05D004490 ORTHO05D005353 1.1e-57 227.3 220 56.4
EL10Ac1g00080 Beta vulgaris HOM05D004490 ORTHO05D005353 1.8e-57 226.5 221 58.4
ClCG09G010540 Citrullus lanatus HOM05D004490 ORTHO05D005353 8.9e-57 224.2 220 55.0
Phvul.007G089700 Phaseolus vulgaris HOM05D004490 ORTHO05D005353 2.6e-56 222.6 221 58.4
Rhsim11G0059700 Rhododendron simsii HOM05D004490 ORTHO05D005353 2.6e-56 222.6 228 61.8
Sabra19G0095100 Salix brachista HOM05D004490 ORTHO05D005353 3.4e-56 222.2 220 59.5
Ah.05g178090 Amaranthus hybridus HOM05D004490 ORTHO05D005353 4.4e-56 221.9 221 56.6
Glyma.20G175700 Glycine max HOM05D004490 ORTHO05D005353 4.4e-56 221.9 221 57.9
SGA_v2.0_scaffold118G32473 Striga asiatica HOM05D004490 ORTHO05D005353 4.4e-56 221.9 211 60.7
TPR.G8816 Trifolium pratense HOM05D004490 ORTHO05D005353 7.5e-56 221.1 223 58.3
AUR62022689 Chenopodium quinoa HOM05D004490 ORTHO05D005353 1.3e-55 220.3 221 57.0
MELO3C024104.2 Cucumis melo HOM05D004490 ORTHO05D005353 2.2e-55 219.5 221 57.5
Medtr1g096410 Medicago truncatula HOM05D004490 ORTHO05D005353 2.2e-55 219.5 180 66.1
Prupe.8G058000 Prunus persica HOM05D004490 ORTHO05D005353 2.2e-55 219.5 220 56.8
vmacro11670 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 2.2e-55 219.5 219 62.1
Lsat_1_v5_gn_5_105541 Lactuca sativa HOM05D004490 ORTHO05D005353 2.9e-55 219.2 222 59.5
arahy.Tifrunner.gnm1.ann1.90XUFN Arachis hypogaea HOM05D004490 ORTHO05D005353 6.4e-55 218.0 216 60.6
Aqoxy2G03181 Aquilegia oxysepala HOM05D004490 ORTHO05D005353 8.3e-55 217.6 219 58.9
Glyma.10G216200 Glycine max HOM05D004490 ORTHO05D005353 2.4e-54 216.1 224 55.8
CANSAT64G2929 Cannabis sativa HOM05D004490 ORTHO05D005353 5.4e-54 214.9 225 56.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 7.0e-54 214.5 193 66.3
CsaV3_7G024020 Cucumis sativus L. HOM05D004490 ORTHO05D005353 7.0e-54 214.5 220 54.5
Solyc11g018670.3 Solanum lycopersicum HOM05D004490 ORTHO05D005353 2.7e-53 212.6 222 59.5
THA.LOC104816311 Tarenaya hassleriana HOM05D004490 ORTHO05D005353 4.6e-53 211.8 223 56.1
EL10Ac1g00082 Beta vulgaris HOM05D004490 ORTHO05D005353 3.9e-52 208.8 181 62.4
AL2G20400 Arabidopsis lyrata HOM05D004490 ORTHO05D005353 5.0e-52 208.4 225 56.0
FvH4_3g44892 Fragaria vesca HOM05D004490 ORTHO05D005353 5.0e-52 208.4 198 58.6
AUR62022497 Chenopodium quinoa HOM05D004490 ORTHO05D005353 6.6e-52 208.0 180 62.8
Sc23g0001210 Simmondsia chinensis HOM05D004490 ORTHO05D005353 8.6e-52 207.6 227 54.2
AT1G65280 Arabidopsis thaliana HOM05D004490 ORTHO05D005353 1.1e-51 207.2 225 55.6
Carub.0002s1095 Capsella rubella HOM05D004490 ORTHO05D005353 1.5e-51 206.8 225 53.8
AUR62004649 Chenopodium quinoa HOM05D004490 ORTHO05D005353 1.5e-51 206.8 184 63.0
Thhalv10028527m.g Eutrema salsugineum HOM05D004490 ORTHO05D005353 1.5e-51 206.8 226 54.9
CARHR056930 Cardamine hirsuta HOM05D004490 ORTHO05D005353 2.5e-51 206.1 225 53.3
Sp6g08010 Schrenkiella parvula HOM05D004490 ORTHO05D005353 5.6e-51 204.9 227 55.1
Os01g0521500 Oryza sativa ssp. japonica HOM05D004490 ORTHO05D005353 7.3e-51 204.5 219 56.6
A09p29500 Brassica napus HOM05D004490 ORTHO05D005353 9.5e-51 204.1 228 54.8
BraA09t38516Z Brassica rapa HOM05D004490 ORTHO05D005353 9.5e-51 204.1 228 54.8
Sopen11g009650 Solanum pennellii HOM05D004490 ORTHO05D005353 2.8e-50 202.6 222 57.7
BcaC04g20957 Brassica carinata HOM05D004490 ORTHO05D005353 3.6e-50 202.2 228 54.4
BolC9t56586H Brassica oleracea HOM05D004490 ORTHO05D005353 3.6e-50 202.2 228 54.4
PGR102G0893 Punica granatum HOM05D004490 ORTHO05D005353 3.6e-50 202.2 223 55.2
PSO017G7136 Papaver somniferum HOM05D004490 ORTHO05D005353 6.2e-50 201.4 219 55.7
PSO063G0599 Papaver somniferum HOM05D004490 ORTHO05D005353 8.1e-50 201.1 219 56.2
Hund27085 Selenicereus undatus HOM05D004490 ORTHO05D005353 8.9e-49 197.6 210 55.2
Aa31LG9G14890 Aethionema arabicum HOM05D004490 ORTHO05D005353 1.2e-48 197.2 175 62.9
VMungo0720G0360 Vigna mungo HOM05D004490 ORTHO05D005353 1.5e-48 196.8 168 63.7
Nitab4.5_0000277g0020 Nicotiana tabacum HOM05D004490 ORTHO05D005353 2.0e-48 196.4 220 56.4
BcaB01g01408 Brassica carinata HOM05D004490 ORTHO05D005353 5.8e-48 194.9 229 52.8
BNapus_Darmor_BZH_scaffold_278p00040 Brassica napus HOM05D004490 ORTHO05D005353 5.8e-48 194.9 208 56.7
CAN.G905.35 Capsicum annuum HOM05D004490 ORTHO05D005353 5.8e-48 194.9 221 56.1
CDE08G1471 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 2.9e-47 192.6 189 56.1
Peaxi162Scf00848g00115 Petunia axillaris HOM05D004490 ORTHO05D005353 6.4e-47 191.4 221 53.8
Zm00001eb427930 Zea mays HOM05D004490 ORTHO05D005353 7.8e-45 184.5 219 52.5
RcHm_v2.0_Chr5g0082701 Rosa chinensis HOM05D004490 ORTHO05D005353 3.0e-44 182.6 186 55.4
HPP92_020159 Vanilla planifolia HOM05D004490 ORTHO05D005353 1.1e-43 180.6 219 48.4
RcHm_v2.0_Chr5g0081671 Rosa chinensis HOM05D004490 ORTHO05D005353 1.5e-43 180.3 186 55.4
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 2.5e-43 179.5 210 50.5
unitig_699.g19825 Utricularia gibba HOM05D004490 ORTHO05D005353 1.2e-42 177.2 220 50.5
SEGI_05919 Sequoiadendron giganteum HOM05D004490 ORTHO05D005353 2.1e-42 176.4 172 58.1
FAN21G1156 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.6e-42 175.6 182 54.4
CDE02G3308 Ceratophyllum demersum HOM05D004490 ORTHO05D005353 1.4e-41 173.7 162 60.5
FAN11G3016 Fragaria x ananassa HOM05D004490 ORTHO05D005353 2.2e-39 166.4 182 52.2
Mapoly0003s0077 Marchantia polymorpha HOM05D004490 ORTHO05D005353 3.0e-36 156.0 212 48.1
SHI09004 Sapria himalayana HOM05D004490 ORTHO05D005353 6.2e-34 148.3 188 50.5
FAN25G2105 Fragaria x ananassa HOM05D004490 ORTHO05D005353 1.1e-33 147.5 158 55.1
Pp3c14_7350 Physcomitrium patens HOM05D004490 ORTHO05D005353 1.5e-32 143.7 201 44.3
CBR_g58400 Chara braunii HOM05D004490 ORTHO05D005353 2.9e-31 139.4 202 43.6
TAR622G0885 Trochodendron aralioides HOM05D004490 ORTHO05D005353 1.4e-30 137.1 103 70.9
TAR630G0004 Trochodendron aralioides HOM05D004490 ORTHO05D005353 2.7e-29 132.9 103 69.9
FvH4_3g44966 Fragaria vesca HOM05D004490 ORTHO05D005353 3.0e-28 129.4 144 54.9
Prupe.3G081100 Prunus persica HOM05D004490 ORTHO05D005353 5.1e-28 128.6 221 40.3
Hma1.2p1_0363F.1_g136650 Hydrangea macrophylla HOM05D004490 ORTHO05D005353 2.5e-27 126.3 117 62.4
AagrBONN_evm.TU.Sc2ySwM_228.3521 Anthoceros agrestis HOM05D004490 ORTHO05D005353 1.6e-26 123.6 214 42.1
Gorai.012G182200 Gossypium raimondii HOM05D004490 ORTHO05D005353 2.8e-26 122.9 220 41.4
Sopen01g003870 Solanum pennellii HOM05D004490 ORTHO05D005353 2.8e-26 122.9 150 52.0
PGSC0003DMG400016394 Solanum tuberosum HOM05D004490 ORTHO05D002367 9.0e-25 117.9 188 45.2
SHI41020 Sapria himalayana HOM05D004490 ORTHO05D005353 4.2e-22 109.0 156 46.2
RcHm_v2.0_Chr5g0082081 Rosa chinensis HOM05D004490 ORTHO05D005353 5.4e-22 108.6 151 48.3
SHI54375 Sapria himalayana HOM05D004490 ORTHO05D005353 7.1e-22 108.2 156 45.5
FvH4_3g44960 Fragaria vesca HOM05D004490 ORTHO05D005353 7.9e-21 104.8 109 58.7
FAN11G0711 Fragaria x ananassa HOM05D004490 ORTHO05D005353 3.0e-20 102.8 116 53.4
Gohir.A04G142550 Gossypium hirsutum HOM05D004490 ORTHO05D005353 3.0e-20 102.8 185 39.5
Actinidia03513 Actinidia chinensis HOM05D004490 ORTHO05D005353 1.1e-19 100.9 107 58.9
PRCOL_00002362 Prasinoderma coloniale HOM05D004490 ORTHO05D005353 3.3e-19 99.4 182 36.8
Gohir.D04G186001 Gossypium hirsutum HOM05D004490 ORTHO05D005353 1.2e-16 90.9 110 49.1
SEGI_30950 Sequoiadendron giganteum HOM05D023998 ORTHO05D005353 5.5e-14 82.0 60 66.7
MCO12G010 Micromonas commoda HOM05D004490 ORTHO05D005353 9.6e-11 71.2 205 32.7
vmacro00772 Vaccinium macrocarpon HOM05D004490 ORTHO05D005353 9.6e-11 71.2 67 61.2


User provided reference genes

Program Settings