Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 8.2e-43 177.2 129 100.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 4.6e-17 91.7 87 63.2
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 4.6e-17 91.7 60 81.7
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 5.9e-17 91.3 42 100.0
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 5.9e-17 91.3 123 62.6
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.3e-16 90.1 102 76.5
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.3e-16 89.4 46 87.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.9e-16 88.6 129 70.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.6e-16 87.8 80 58.8
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 6.6e-16 87.8 45 88.9
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 8.6e-16 87.4 85 61.2
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 8.6e-16 87.4 71 67.6
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 1.1e-15 87.0 85 87.1
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.5e-15 86.7 80 58.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.5e-15 86.7 42 92.9
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.9e-15 86.3 124 62.9
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.9e-15 86.3 85 61.2
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.5e-15 85.9 80 58.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 2.5e-15 85.9 42 90.5
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 3.3e-15 85.5 69 63.8
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.3e-15 85.5 64 68.8
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 4.3e-15 85.1 97 55.7
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 5.6e-15 84.7 80 58.8
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 5.6e-15 84.7 41 95.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 5.6e-15 84.7 87 62.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.3e-15 84.3 42 88.1
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 7.3e-15 84.3 84 61.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.5e-15 84.0 67 64.2
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 9.5e-15 84.0 85 56.5
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 9.5e-15 84.0 45 84.4
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 9.5e-15 84.0 120 65.0
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 9.5e-15 84.0 56 73.2
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.2e-14 83.6 84 57.1
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.6e-14 83.2 71 66.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 2.1e-14 82.8 81 77.8
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 2.1e-14 82.8 49 79.6
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.1e-14 82.8 40 92.5
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 2.8e-14 82.4 42 90.5
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.8e-14 82.4 42 90.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.8e-14 82.4 42 90.5
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.8e-14 82.4 46 84.8
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-14 82.4 46 84.8
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 2.8e-14 82.4 94 72.3
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 3.6e-14 82.0 75 58.7
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 3.6e-14 82.0 67 67.2
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 3.6e-14 82.0 95 56.8
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 6.2e-14 81.3 89 79.8
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.1e-13 80.5 79 55.7
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-13 80.5 46 82.6
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.1e-13 80.5 55 70.9
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 1.4e-13 80.1 52 73.1
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.8e-13 79.7 51 76.5
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.8e-13 79.7 82 86.6
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.8e-13 79.7 76 63.2
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 2.3e-13 79.3 39 89.7
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 2.3e-13 79.3 39 89.7
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 3.1e-13 79.0 87 55.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 3.1e-13 79.0 87 55.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 3.1e-13 79.0 87 55.2
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 3.1e-13 79.0 48 81.2
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.1e-13 79.0 41 87.8
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 3.1e-13 79.0 38 94.7
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 3.1e-13 79.0 58 69.0
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.0e-13 78.6 45 80.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.0e-13 78.6 45 80.0
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 4.0e-13 78.6 45 80.0
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 4.0e-13 78.6 45 80.0
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 4.0e-13 78.6 96 51.0
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.2e-13 78.2 51 76.5
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 5.2e-13 78.2 45 80.0
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 5.2e-13 78.2 78 59.0
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 5.2e-13 78.2 42 83.3
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 6.8e-13 77.8 35 100.0
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 8.9e-13 77.4 80 57.5
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 8.9e-13 77.4 84 58.3
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 8.9e-13 77.4 42 81.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 8.9e-13 77.4 87 52.9
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.2e-12 77.0 93 51.6
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-12 77.0 82 56.1
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.2e-12 77.0 124 58.9
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 1.2e-12 77.0 38 86.8
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.2e-12 77.0 135 64.4
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.2e-12 77.0 72 61.1
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 2.0e-12 76.3 94 52.1
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.0e-12 76.3 87 52.9
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 2.0e-12 76.3 81 54.3
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.6e-12 75.9 84 58.3
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.6e-12 75.9 89 50.6
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 2.6e-12 75.9 87 55.2
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 2.6e-12 75.9 83 55.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.4e-12 75.5 126 57.9
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 4.4e-12 75.1 82 54.9
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 4.4e-12 75.1 97 47.4
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 4.4e-12 75.1 79 53.2
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 5.8e-12 74.7 81 54.3
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 7.5e-12 74.3 35 97.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 7.5e-12 74.3 35 97.1
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 7.5e-12 74.3 78 57.7
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.5e-12 74.3 82 48.8
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 7.5e-12 74.3 54 72.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.8e-12 73.9 84 56.0
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 9.8e-12 73.9 106 49.1
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.3e-11 73.6 35 91.4
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.7e-11 73.2 35 88.6
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.2e-11 72.8 35 88.6
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 2.2e-11 72.8 89 50.6
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.9e-11 72.4 82 52.4
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.9e-11 72.4 46 76.1
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 3.7e-11 72.0 82 52.4
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 3.7e-11 72.0 84 54.8
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.7e-11 72.0 35 88.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 3.7e-11 72.0 35 88.6
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.9e-11 71.6 96 52.1
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 4.9e-11 71.6 96 52.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 4.9e-11 71.6 77 54.5
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 6.4e-11 71.2 80 53.8
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.4e-11 71.2 45 75.6
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 6.4e-11 71.2 35 88.6
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 6.4e-11 71.2 83 54.2
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 6.4e-11 71.2 83 51.8
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.4e-10 70.1 60 58.3
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.4e-10 70.1 36 83.3
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 1.9e-10 69.7 36 83.3
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.4e-10 69.3 70 60.0
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 6.0e-09 64.7 118 58.5
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 7.8e-09 64.3 111 39.6
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 2.3e-08 62.8 84 50.0
Actinidia21670 Actinidia chinensis HOM05D005853 ORTHO05D007308 9.5e-07 57.4 79 46.8
Dinv38038 Davidia involucrata HOM05D005853 ORTHO05D007308 4.7e-06 55.1 43 69.8


User provided reference genes

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