Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027680 Camellia sinensis var. sinensis HOM05D007675 ORTHO05D009699 4.4e-99 365.2 263 100.0
Rhsim07G0245100 Rhododendron simsii HOM05D007675 ORTHO05D009699 2.1e-40 170.2 306 56.2
Actinidia12984 Actinidia chinensis HOM05D007675 ORTHO05D009699 1.0e-39 167.9 305 60.0
Rhsim11G0171900 Rhododendron simsii HOM05D007675 ORTHO05D009699 8.6e-39 164.9 306 55.2
DCAR_022084 Daucus carota HOM05D007675 ORTHO05D009699 1.0e-31 141.4 280 55.0
Rhsim03G0146100 Rhododendron simsii HOM05D007675 ORTHO05D009699 1.1e-30 137.9 283 37.1
Psat7g206160 Pisum sativum HOM05D007675 ORTHO05D009699 3.2e-25 119.8 277 46.6
Eucgr.I01233 Eucalyptus grandis HOM05D007675 ORTHO05D009699 1.6e-24 117.5 300 44.3
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 6.0e-24 115.5 278 36.7
COL.COLO4_17790 Corchorus olitorius HOM05D007675 ORTHO05D009699 8.7e-23 111.7 114 49.1
Solyc10g051010.3 Solanum lycopersicum HOM05D007675 ORTHO05D009699 1.3e-21 107.8 279 45.2
ClCG09G017910 Citrullus lanatus HOM05D007675 ORTHO05D009699 5.3e-20 102.4 301 43.2
SalBow3G0197 Salvia bowleyana HOM05D007675 ORTHO05D009699 6.9e-20 102.1 270 47.4
Dinv23568 Davidia involucrata HOM05D007675 ORTHO05D009699 3.4e-19 99.8 88 50.0
Nitab4.5_0000876g0030 Nicotiana tabacum HOM05D007675 ORTHO05D009699 3.4e-19 99.8 117 42.7
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 4.9e-18 95.9 279 43.0
Gohir.A01G181200 Gossypium hirsutum HOM05D007675 ORTHO05D009699 6.4e-18 95.5 278 44.2
Psat6g221080 Pisum sativum HOM05D007675 ORTHO05D009699 1.9e-17 94.0 295 43.7
Lalb_Chr03g0025891 Lupinus albus HOM05D007675 ORTHO05D009699 3.2e-17 93.2 272 39.0
Lsat_1_v5_gn_1_38361 Lactuca sativa HOM05D007675 ORTHO05D009699 5.4e-17 92.4 265 51.7
Cpa.g.sc62.93 Carica papaya HOM05D007675 ORTHO05D009699 1.2e-16 91.3 283 49.8
AUR62016675 Chenopodium quinoa HOM05D007675 ORTHO05D009699 1.6e-16 90.9 266 46.2
Lj3g0001256 Lotus japonicus HOM05D007675 ORTHO05D009699 1.6e-16 90.9 272 48.9
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 1.0e-15 88.2 268 43.3
AUR62011385 Chenopodium quinoa HOM05D007675 ORTHO05D009699 1.3e-15 87.8 266 44.7
TPR.G29893 Trifolium pratense HOM05D007675 ORTHO05D009699 5.1e-15 85.9 271 44.3
Haze_02434 Corylus avellana HOM05D007675 ORTHO05D009699 6.7e-15 85.5 323 44.9
Sabra04G0099300 Salix brachista HOM05D007675 ORTHO05D009699 6.7e-15 85.5 307 46.3
EL10Ac9g21777 Beta vulgaris HOM05D007675 ORTHO05D009699 1.5e-14 84.3 294 41.8
Thecc.02G030300 Theobroma cacao HOM05D007675 ORTHO05D009699 1.5e-14 84.3 276 51.4
Potri.004G149400 Populus trichocarpa HOM05D007675 ORTHO05D009699 2.5e-14 83.6 306 46.1
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 2.5e-14 83.6 270 50.4
Peaxi162Scf00003g00147 Petunia axillaris HOM05D007675 ORTHO05D009699 3.3e-14 83.2 101 43.6
Ah.01g019740 Amaranthus hybridus HOM05D007675 ORTHO05D009699 4.3e-14 82.8 267 44.6
Atru.chr5.2909 Acer truncatum HOM05D007675 ORTHO05D009699 5.6e-14 82.4 279 43.0
MELO3C021959.2 Cucumis melo HOM05D007675 ORTHO05D009699 7.4e-14 82.0 301 40.9
QL11p039609 Quercus lobata HOM05D007675 ORTHO05D009699 7.4e-14 82.0 308 46.4
CsaV3_2G014520 Cucumis sativus L. HOM05D007675 ORTHO05D009699 1.3e-13 81.3 301 40.5
Phvul.011G049000 Phaseolus vulgaris HOM05D007675 ORTHO05D009699 1.3e-13 81.3 282 48.6
MD10G1084800 Malus domestica HOM05D007675 ORTHO05D009699 1.6e-13 80.9 271 49.4
MSTRG.27711 Avicennia marina HOM05D007675 ORTHO05D009699 6.2e-13 79.0 88 44.3
Sc14g0001640 Simmondsia chinensis HOM05D007675 ORTHO05D009699 1.8e-12 77.4 290 41.0
VMungo1127G1032 Vigna mungo HOM05D007675 ORTHO05D009699 1.8e-12 77.4 279 48.0
Cc02_g18070 Coffea canephora HOM05D007675 ORTHO05D009699 3.1e-12 76.6 306 44.8
Thhalv10022658m.g Eutrema salsugineum HOM05D007675 ORTHO05D009699 3.1e-12 76.6 271 37.6
SHI05443 Sapria himalayana HOM05D007675 ORTHO05D009699 6.9e-12 75.5 296 44.3
Nitab4.5_0001361g0100 Nicotiana tabacum HOM05D007675 ORTHO05D009699 9.0e-12 75.1 91 42.9
Sed0019685 Sechium edule HOM05D007675 ORTHO05D009699 1.2e-11 74.7 94 41.5
Ciclev10028281m.g Citrus clementina HOM05D007675 ORTHO05D009699 2.6e-11 73.6 64 46.9
Glyma.11G122100 Glycine max HOM05D007675 ORTHO05D009699 3.4e-11 73.2 274 46.7
TAR623G1478 Trochodendron aralioides HOM05D007675 ORTHO05D009699 1.7e-10 70.9 88 36.4
Cfa004966 Carpinus fangiana HOM05D007675 ORTHO05D009699 2.9e-10 70.1 51 66.7
Manes.15G146700 Manihot esculenta HOM05D007675 ORTHO05D009699 2.9e-10 70.1 96 59.4
BcaC06g36105 Brassica carinata HOM05D007675 ORTHO05D009699 1.1e-09 68.2 266 33.5
ECA246G0465 Erigeron canadensis HOM05D007675 ORTHO05D009699 1.4e-09 67.8 81 44.4
Lj5P203T17 Lonicera japonica HOM05D007675 ORTHO05D009699 2.4e-09 67.0 88 39.8
Ca_20831_v3 Cicer arietinum L. HOM05D007675 ORTHO05D009699 4.2e-09 66.2 92 37.0
Nn5g29449 Nelumbo nucifera HOM05D007675 ORTHO05D009699 4.2e-09 66.2 88 36.4
TAR623G0020 Trochodendron aralioides HOM05D007675 ORTHO05D009699 4.2e-09 66.2 74 45.9
Os12g0407900 Oryza sativa ssp. japonica HOM05D007675 ORTHO05D009699 5.5e-09 65.9 96 38.5
Medtr4g068800 Medicago truncatula HOM05D007675 ORTHO05D009699 7.1e-09 65.5 262 48.9
TWI79G0081 Tripterygium wilfordii HOM05D007675 ORTHO05D009699 1.2e-08 64.7 84 45.2
Actinidia00486 Actinidia chinensis HOM05D028771 ORTHO05D026283 1.6e-08 64.3 94 44.7
Gohir.D01G172300 Gossypium hirsutum HOM05D007675 ORTHO05D009699 2.1e-08 63.9 60 50.0
Aqoxy5G01397 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 3.5e-08 63.2 88 36.4
C07p07790 Brassica napus HOM05D007675 ORTHO05D009699 3.5e-08 63.2 95 35.8
BolC7t41197H Brassica oleracea HOM05D007675 ORTHO05D009699 3.5e-08 63.2 95 35.8
BraA07t28274Z Brassica rapa HOM05D007675 ORTHO05D009699 3.5e-08 63.2 95 35.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 4.6e-08 62.8 70 41.4
PGR042G1965 Punica granatum HOM05D007675 ORTHO05D009699 4.6e-08 62.8 83 54.2
Sp3g29280 Schrenkiella parvula HOM05D007675 ORTHO05D009699 4.6e-08 62.8 93 38.7
arahy.Tifrunner.gnm1.ann1.C1QAGZ Arachis hypogaea HOM05D007675 ORTHO05D009699 6.0e-08 62.4 198 49.0
RcHm_v2.0_Chr6g0245191 Rosa chinensis HOM05D007675 ORTHO05D009699 6.0e-08 62.4 61 44.3
A07p04830 Brassica napus HOM05D007675 ORTHO05D009699 1.0e-07 61.6 95 34.7
CiPaw.05G059700 Carya illinoinensis HOM05D007675 ORTHO05D009699 1.0e-07 61.6 50 58.0
Gorai.002G213900 Gossypium raimondii HOM05D007675 ORTHO05D009699 1.0e-07 61.6 60 48.3
Migut.N01220 Erythranthe guttata HOM05D007675 ORTHO05D009699 1.3e-07 61.2 60 41.7
THA.LOC104804364 Tarenaya hassleriana HOM05D007675 ORTHO05D009699 1.3e-07 61.2 57 42.1
Aqoxy5G01741 Aquilegia oxysepala HOM05D007675 ORTHO05D009699 1.8e-07 60.8 88 35.2
Carub.0003s2985 Capsella rubella HOM05D007675 ORTHO05D009699 1.8e-07 60.8 93 36.6
CARHR106300 Cardamine hirsuta HOM05D007675 ORTHO05D009699 3.9e-07 59.7 58 43.1
arahy.Tifrunner.gnm1.ann1.F8FJH0 Arachis hypogaea HOM05D007675 ORTHO05D009699 5.1e-07 59.3 61 41.0
FvH4_2g02001 Fragaria vesca HOM05D007675 ORTHO05D009699 6.7e-07 58.9 62 41.9
Aa31LG8G13490 Aethionema arabicum HOM05D007675 ORTHO05D009699 8.7e-07 58.5 56 42.9
HPP92_017783 Vanilla planifolia HOM05D007675 ORTHO05D009699 1.1e-06 58.2 118 44.9
Potri.009G110400 Populus trichocarpa HOM05D007675 ORTHO05D009699 1.5e-06 57.8 90 33.3
FAN15G2036 Fragaria x ananassa HOM05D007675 ORTHO05D009699 1.9e-06 57.4 62 40.3
HanXRQChr04g0128461 Helianthus annuus HOM05D007675 ORTHO05D009699 1.9e-06 57.4 55 45.5
AT2G15980 Arabidopsis thaliana HOM05D007675 ORTHO05D009699 5.6e-06 55.8 94 35.1


User provided reference genes

Program Settings