Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1614.0 831 100.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1228.4 802 81.2
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1219.5 792 81.1
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1203.3 799 80.2
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1199.5 799 79.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1195.3 794 80.6
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1187.2 800 79.4
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1178.3 797 77.9
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1176.0 852 73.8
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1175.6 790 78.1
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1171.4 793 77.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1164.1 802 76.9
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1157.9 792 76.5
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1155.6 802 75.7
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1154.8 804 75.6
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1154.8 803 75.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1151.0 803 75.3
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1151.0 801 75.3
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1149.4 794 75.8
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1148.3 783 75.5
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1146.7 794 75.7
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1146.0 783 75.4
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1144.8 790 75.6
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1144.0 800 74.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1142.5 794 75.9
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1136.3 787 75.1
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1133.6 791 75.6
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1132.9 798 74.1
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1132.9 796 75.3
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1131.7 786 74.9
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1131.3 797 74.2
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1130.9 798 74.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1128.6 805 74.8
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1126.7 795 74.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1125.5 790 73.9
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1123.6 797 74.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1122.8 790 73.8
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1122.8 790 73.5
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1121.3 782 73.8
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1119.8 792 74.9
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1119.4 790 73.5
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1116.7 791 73.5
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1115.5 792 75.8
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1115.1 796 73.7
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1114.4 785 74.9
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1112.1 785 75.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1111.3 797 75.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1109.7 796 71.0
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1109.7 791 73.8
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1108.2 802 71.9
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1106.7 792 72.1
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1105.5 843 70.7
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1104.0 798 71.3
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1099.7 790 73.0
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1097.0 801 73.3
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1093.2 789 72.6
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1091.6 802 71.6
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1089.3 788 70.1
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1088.9 791 70.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1081.6 788 70.2
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1080.9 802 70.4
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1079.7 795 70.8
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1079.7 788 69.4
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1079.7 788 69.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1076.6 786 69.7
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 5.7e-312 1074.3 794 71.4
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 5.7e-312 1073.5 799 68.6
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 1.1e-311 1073.2 801 69.5
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 5.1e-311 1070.8 763 73.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 6.8e-311 1070.5 786 71.1
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 2.5e-310 1068.5 788 69.2
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 7.3e-310 1067.0 786 71.1
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 1.3e-309 1066.2 792 68.8
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 2.8e-309 1065.1 792 68.8
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 4.0e-308 1061.2 792 68.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 1.5e-307 1059.3 792 68.4
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 5.4e-305 1050.8 788 70.7
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 5.4e-305 1050.8 745 73.6
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 1.2e-304 1049.7 780 68.5
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 6.0e-304 1047.3 786 70.2
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 6.0e-304 1047.3 780 68.5
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 7.9e-304 1047.0 790 70.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 7.9e-304 1047.0 733 74.2
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 1.0e-303 1046.6 779 68.3
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 1.9e-302 1042.3 779 67.8
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 2.5e-302 1042.0 794 70.0
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 9.6e-302 1040.0 779 67.7
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 1.8e-300 1035.8 693 77.3
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 1.2e-299 1033.1 791 69.9
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 1.2e-299 1033.1 781 70.0
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 5.5e-297 1024.2 782 69.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 5.1e-295 1017.7 800 67.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 3.3e-294 1015.0 814 67.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 3.3e-294 1015.0 814 67.4
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 7.9e-288 993.8 774 67.6
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 3.9e-287 991.5 696 73.3
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 2.8e-285 985.3 806 64.5
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 1.5e-283 979.5 732 70.5
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 5.0e-282 974.5 743 68.9
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 1.2e-275 953.4 736 66.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 5.5e-265 917.9 586 79.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 6.1e-264 914.4 786 63.9
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 5.1e-263 911.4 792 62.8
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 6.3e-261 904.4 587 79.6
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 1.7e-258 896.3 730 63.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 4.2e-249 865.1 775 57.2
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.2e-240 837.0 605 73.4
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 1.7e-234 816.6 543 75.9
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 1.9e-233 813.1 546 74.7
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 9.5e-209 731.1 651 59.8
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 6.2e-208 728.4 770 50.1
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.1e-201 707.6 749 48.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 1.5e-198 697.2 740 48.0
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.2e-197 693.3 778 52.6
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.4e-188 664.1 731 48.4
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 7.4e-161 572.0 378 75.7
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.4e-156 557.8 460 61.3
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 4.8e-152 542.7 431 72.2
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.0e-141 508.4 330 77.6
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.5e-140 504.6 753 39.6
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.7e-131 473.8 438 64.4
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.5e-94 350.5 340 63.2
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 2.0e-89 334.7 285 64.6
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 3.7e-67 260.8 333 46.5
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 9.9e-65 252.7 789 29.4
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.3e-64 252.3 832 27.9
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.9e-55 221.9 324 46.6
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.4e-34 151.8 112 74.1
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.2e-30 139.4 156 59.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 4.8e-27 127.5 86 77.9
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 4.1e-26 124.4 86 76.7
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-23 115.5 69 73.9
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 5.5e-23 114.0 68 73.5
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 9.7e-20 103.2 204 32.8
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 7.0e-18 97.1 96 49.0
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 2.8e-06 58.5 45 71.1


User provided reference genes

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