Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027647 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D109521 2.2e-31 138.3 67 100.0
CSS0044281 Camellia sinensis var. sinensis HOM05D000804 ORTHO05D000989 2.3e-28 128.3 67 95.5
RhsimUnG0128600 Rhododendron simsii HOM05D000804 ORTHO05D000989 5.8e-16 87.0 67 61.2
Rhsim03G0067900 Rhododendron simsii HOM05D000804 ORTHO05D000989 1.7e-15 85.5 68 63.2
Dinv43540 Davidia involucrata HOM05D000804 ORTHO05D000989 3.2e-14 81.3 63 65.1
vmacro21109 Vaccinium macrocarpon HOM05D000804 ORTHO05D000989 1.2e-13 79.3 67 58.2
Cc00_g12220 Coffea canephora HOM05D000804 ORTHO05D000989 2.3e-12 75.1 67 59.7
Oeu041527.1 Olea europaea HOM05D000804 ORTHO05D000989 8.7e-12 73.2 63 58.7
Lj7A557T58 Lonicera japonica HOM05D000804 ORTHO05D000989 1.1e-11 72.8 63 58.7
Nitab4.5_0000592g0050 Nicotiana tabacum HOM05D000804 ORTHO05D000989 1.1e-11 72.8 65 58.5
MSTRG.17089 Avicennia marina HOM05D000804 ORTHO05D000989 7.4e-11 70.1 65 55.4
Nitab4.5_0000050g0080 Nicotiana tabacum HOM05D000804 ORTHO05D000989 7.4e-11 70.1 63 58.7
Sed0027349 Sechium edule HOM05D000804 ORTHO05D000989 1.3e-10 69.3 63 55.6
Actinidia21599 Actinidia chinensis HOM05D000804 ORTHO05D000989 1.6e-10 68.9 68 57.4
Nitab4.5_0005334g0040 Nicotiana tabacum HOM05D000804 ORTHO05D000989 2.1e-10 68.6 63 58.7
MD07G1077500 Malus domestica HOM05D000804 ORTHO05D000989 1.1e-09 66.2 63 57.1
Oeu041526.1 Olea europaea HOM05D000804 ORTHO05D000989 1.1e-09 66.2 39 79.5
SGA_v2.0_scaffold5G03078 Striga asiatica HOM05D000804 ORTHO05D000989 1.4e-09 65.9 65 53.8
SalBow5G1053 Salvia bowleyana HOM05D000804 ORTHO05D000989 1.8e-09 65.5 67 47.8
GSVIVG01026708001 Vitis vinifera HOM05D000804 ORTHO05D000989 5.3e-09 63.9 63 52.4
Ciclev10031213m.g Citrus clementina HOM05D000804 ORTHO05D000989 6.9e-09 63.5 63 54.0
ClCG06G008160 Citrullus lanatus HOM05D000804 ORTHO05D000989 1.2e-08 62.8 64 53.1
TWI34G1655 Tripterygium wilfordii HOM05D000804 ORTHO05D000989 1.2e-08 62.8 63 49.2
Cc00_g12230 Coffea canephora HOM05D000804 ORTHO05D000989 1.5e-08 62.4 64 51.6
vmacro13572 Vaccinium macrocarpon HOM05D000804 ORTHO05D000989 2.0e-08 62.0 64 53.1
Hma1.2p1_0420F.1_g149750 Hydrangea macrophylla HOM05D000804 ORTHO05D000989 3.4e-08 61.2 40 70.0
Manes.08G157900 Manihot esculenta HOM05D000804 ORTHO05D000989 3.4e-08 61.2 63 47.6
PSO170G6414 Papaver somniferum HOM05D000804 ORTHO05D000989 3.4e-08 61.2 67 50.7
QL04p052232 Quercus lobata HOM05D000804 ORTHO05D000989 4.5e-08 60.8 65 50.8
CsaV3_2G011000 Cucumis sativus L. HOM05D000804 ORTHO05D000989 5.8e-08 60.5 64 50.0
MD07G1077400 Malus domestica HOM05D000804 ORTHO05D000989 5.8e-08 60.5 63 50.8
Manes.09G131600 Manihot esculenta HOM05D000804 ORTHO05D000989 5.8e-08 60.5 63 49.2
PSO455G0087 Papaver somniferum HOM05D000804 ORTHO05D000989 5.8e-08 60.5 67 50.7
RcHm_v2.0_Chr1g0337121 Rosa chinensis HOM05D000804 ORTHO05D000989 5.8e-08 60.5 63 50.8
RcHm_v2.0_Chr1g0337171 Rosa chinensis HOM05D000804 ORTHO05D000989 5.8e-08 60.5 63 49.2
COL.COLO4_08647 Corchorus olitorius HOM05D000804 ORTHO05D000989 7.6e-08 60.1 63 49.2
FvH4_7g07140 Fragaria vesca HOM05D000804 ORTHO05D000989 7.6e-08 60.1 63 50.8
FAN06G1420 Fragaria x ananassa HOM05D000804 ORTHO05D000989 7.6e-08 60.1 63 50.8
FAN10G3016 Fragaria x ananassa HOM05D000804 ORTHO05D000989 7.6e-08 60.1 63 50.8
Hma1.2p1_0420F.1_g149730 Hydrangea macrophylla HOM05D000804 ORTHO05D000989 7.6e-08 60.1 61 54.1
Peaxi162Scf00245g00317 Petunia axillaris HOM05D000804 ORTHO05D000989 7.6e-08 60.1 66 53.0
Prupe.2G098700 Prunus persica HOM05D000804 ORTHO05D000989 7.6e-08 60.1 63 50.8
CiPaw.01G101400 Carya illinoinensis HOM05D000804 ORTHO05D000989 1.0e-07 59.7 64 50.0
Lj9A611T97 Lonicera japonica HOM05D000804 ORTHO05D000989 1.0e-07 59.7 63 49.2
Lj9A614T45 Lonicera japonica HOM05D000804 ORTHO05D000989 1.0e-07 59.7 63 49.2
Prupe.2G098600 Prunus persica HOM05D000804 ORTHO05D000989 1.3e-07 59.3 64 53.1
Sabra13G0063800 Salix brachista HOM05D000804 ORTHO05D000989 1.3e-07 59.3 68 45.6
Lalb_Chr12g0210121 Lupinus albus HOM05D000804 ORTHO05D000989 1.7e-07 58.9 67 50.7
arahy.Tifrunner.gnm1.ann1.P69YI0 Arachis hypogaea HOM05D000804 ORTHO05D000989 2.2e-07 58.5 63 47.6
EL10Ac1g00677 Beta vulgaris HOM05D000804 ORTHO05D000989 2.9e-07 58.2 67 47.8
Duzib177G0290 Durio zibethinus HOM05D000804 ORTHO05D000989 2.9e-07 58.2 61 52.5
Glyma.03G092800 Glycine max HOM05D000804 ORTHO05D000989 2.9e-07 58.2 63 49.2
SalBow5G1993 Salvia bowleyana HOM05D000804 ORTHO05D000989 2.9e-07 58.2 66 47.0
Atru.chr2.1712 Acer truncatum HOM05D000804 ORTHO05D000989 4.9e-07 57.4 67 43.3
arahy.Tifrunner.gnm1.ann1.X69TWL Arachis hypogaea HOM05D000804 ORTHO05D000989 4.9e-07 57.4 63 46.0
arahy.Tifrunner.gnm1.ann1.9P0NRY Arachis hypogaea HOM05D000804 ORTHO05D000989 6.5e-07 57.0 63 47.6
MSTRG.20635 Avicennia marina HOM05D000804 ORTHO05D000989 8.4e-07 56.6 68 41.2
Migut.B01447 Erythranthe guttata HOM05D000804 ORTHO05D000989 8.4e-07 56.6 67 43.3
FAN01G2319 Fragaria x ananassa HOM05D000804 ORTHO05D000989 8.4e-07 56.6 63 47.6
HanXRQChr07g0203011 Helianthus annuus HOM05D000804 ORTHO05D000989 8.4e-07 56.6 63 42.9
HanXRQChr16g0522671 Helianthus annuus HOM05D000804 ORTHO05D000989 1.1e-06 56.2 63 47.6
Lj3g0008193 Lotus japonicus HOM05D000804 ORTHO05D000989 1.1e-06 56.2 63 46.0
PGR083G2592 Punica granatum HOM05D000804 ORTHO05D000989 1.1e-06 56.2 63 47.6
Potri.013G073600 Populus trichocarpa HOM05D000804 ORTHO05D000989 1.4e-06 55.8 64 42.2
Thecc.05G230700 Theobroma cacao HOM05D000804 ORTHO05D000989 1.4e-06 55.8 60 53.3
arahy.Tifrunner.gnm1.ann1.Z1TE7K Arachis hypogaea HOM05D000804 ORTHO05D000989 2.5e-06 55.1 63 46.0
CARHR077540 Cardamine hirsuta HOM05D000804 ORTHO05D000989 2.5e-06 55.1 73 47.9
Nn1g00132 Nelumbo nucifera HOM05D000804 ORTHO05D000989 4.2e-06 54.3 72 47.2
TPR.G29948 Trifolium pratense HOM05D000804 ORTHO05D000989 4.2e-06 54.3 63 47.6
TAR375G0594 Trochodendron aralioides HOM05D000804 ORTHO05D000989 4.2e-06 54.3 64 50.0
Haze_15811 Corylus avellana HOM05D000804 ORTHO05D000989 5.5e-06 53.9 63 46.0
ECA234G1108 Erigeron canadensis HOM05D000804 ORTHO05D000989 5.5e-06 53.9 63 42.9
TPR.G9788 Trifolium pratense HOM05D000804 ORTHO05D000989 5.5e-06 53.9 63 47.6
Cfa003676 Carpinus fangiana HOM05D000804 ORTHO05D005389 7.1e-06 53.5 63 46.0
Oeu032764.1 Olea europaea HOM05D000804 ORTHO05D000989 7.1e-06 53.5 67 41.8


User provided reference genes

Program Settings