Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.9e-209 732.3 374 100.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 4.9e-205 717.6 374 98.4
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 2.0e-150 536.2 374 75.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.8e-138 494.2 375 70.4
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 6.3e-136 488.0 329 78.7
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 8.6e-133 477.6 381 68.0
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.5e-132 476.1 376 70.5
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 9.8e-129 464.2 379 69.1
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.3e-125 453.8 378 66.7
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 6.6e-125 451.4 367 68.7
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.6e-117 424.9 374 62.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 3.1e-114 416.0 376 62.8
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.2e-113 414.1 376 62.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 7.0e-111 404.8 367 63.5
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 4.3e-108 395.6 375 60.8
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 1.8e-106 390.2 384 57.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.1e-106 389.4 396 60.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 4.0e-106 389.0 387 57.1
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.3e-104 384.0 389 56.8
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.9e-104 382.1 390 58.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.4e-103 380.6 377 56.8
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 3.2e-103 379.4 389 55.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.8e-102 374.8 382 53.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 5.1e-101 372.1 377 59.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-100 370.2 383 56.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.9e-100 370.2 383 56.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.3e-100 368.2 260 70.4
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 2.1e-99 366.7 406 55.4
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 8.1e-99 364.8 389 54.0
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 7.6e-97 358.2 411 53.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.7e-96 357.1 409 53.5
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 3.8e-96 355.9 382 51.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 3.8e-96 355.9 387 53.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 4.9e-96 355.5 401 52.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 8.4e-96 354.8 377 57.0
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 8.4e-96 354.8 377 55.4
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 2.4e-95 353.2 411 52.6
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 3.2e-95 352.8 388 56.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 4.2e-95 352.4 392 55.4
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 7.8e-94 348.2 363 57.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 7.8e-94 348.2 390 53.8
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.9e-92 343.6 380 53.7
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 8.1e-91 338.2 393 53.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.4e-90 337.4 382 53.7
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.4e-90 336.7 384 53.9
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.1e-90 336.3 419 50.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 5.3e-90 335.5 386 53.9
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.9e-90 335.1 380 54.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.6e-89 333.2 395 52.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.7e-88 330.5 418 49.0
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.4e-87 327.4 411 53.5
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.9e-87 327.0 400 50.8
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 3.2e-87 326.2 410 51.5
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.4e-87 325.5 381 53.5
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 5.4e-87 325.5 380 52.6
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 7.1e-87 325.1 378 54.8
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.5e-86 322.8 409 50.9
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 3.9e-85 319.3 375 52.0
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.6e-85 318.5 427 48.2
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.5e-84 316.6 386 51.8
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.6e-83 313.9 379 51.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.6e-83 312.8 381 51.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-82 310.8 405 49.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.4e-82 310.1 381 51.7
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.4e-82 310.1 379 51.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 9.0e-82 308.1 406 48.5
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.2e-81 307.8 379 50.7
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.5e-81 307.4 315 53.7
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.7e-80 303.9 330 54.8
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 3.8e-80 302.8 379 52.2
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.2e-79 299.3 380 48.9
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.2e-79 299.3 407 47.7
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 4.2e-79 299.3 387 48.1
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.5e-78 296.2 422 47.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.3e-77 294.3 370 51.6
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.8e-77 293.9 380 48.7
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.8e-77 293.9 379 51.2
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 6.7e-77 292.0 378 49.7
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.1e-76 291.2 417 46.5
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-74 284.3 395 47.8
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.0e-73 280.4 396 46.7
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.2e-72 276.9 394 46.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.9e-72 276.6 380 47.9
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 6.4e-72 275.4 384 47.4
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 8.4e-72 275.0 271 59.8
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.2e-71 272.7 331 49.2
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 7.1e-71 271.9 379 47.8
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.6e-70 270.8 404 46.3
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.3e-69 267.7 385 48.1
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 3.0e-69 266.5 377 46.4
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 1.3e-67 261.2 369 47.2
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 2.6e-65 253.4 407 43.5
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.2e-64 250.4 409 42.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.4e-63 247.7 409 42.8
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 5.5e-63 245.7 417 41.7
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.1e-62 243.8 409 43.3
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 7.9e-62 241.9 329 49.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 3.0e-61 240.0 408 42.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 3.9e-61 239.6 389 44.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 3.1e-58 229.9 407 43.5
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.0e-58 228.4 383 42.8
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-57 228.0 407 42.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-57 228.0 407 42.3
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.9e-57 225.7 255 54.9
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.8e-56 223.0 288 49.7
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 8.5e-56 221.9 407 41.3
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.9e-55 220.7 406 41.1
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-54 218.0 406 40.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.6e-54 216.1 412 38.6
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 6.1e-54 215.7 386 40.7
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 4.3e-52 209.5 420 40.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.6e-49 200.3 417 38.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.0e-48 198.4 417 38.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-46 191.0 251 45.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 8.8e-45 185.3 418 37.8
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 2.0e-44 184.1 418 38.0
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.0e-44 184.1 259 44.4
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.0e-44 184.1 197 53.8
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-44 183.7 258 43.0
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 3.3e-44 183.3 417 37.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 9.7e-44 181.8 252 44.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 6.3e-43 179.1 258 42.2
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.1e-42 176.8 217 46.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.1e-42 176.4 264 43.2
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 4.1e-42 176.4 221 47.5
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.0e-40 171.8 395 35.2
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.3e-40 171.4 252 46.0
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.2e-40 170.6 256 42.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.0e-40 169.5 201 51.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.5e-40 168.7 252 42.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.1e-39 168.3 324 40.4
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 5.5e-39 166.0 196 47.4
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 5.5e-39 166.0 258 41.9
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.6e-38 164.5 496 30.2
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 2.7e-38 163.7 377 32.1
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 3.6e-38 163.3 207 46.9
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 4.7e-38 162.9 219 46.1
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.7e-38 162.9 416 33.7
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 3.0e-37 160.2 249 40.6
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.2e-37 159.5 386 31.6
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 8.8e-37 158.7 259 44.4
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-36 158.3 270 44.1
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.1e-36 158.3 274 42.0
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-36 158.3 222 41.0
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.2e-35 154.1 224 41.1
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-34 151.8 232 38.4
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.4e-34 150.6 226 43.8
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 4.1e-34 149.8 243 41.6
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 7.0e-34 149.1 259 39.0
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 9.1e-34 148.7 262 40.8
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.2e-33 148.3 227 46.3
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 5.9e-33 146.0 420 35.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 7.7e-33 145.6 329 35.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.9e-31 141.0 232 41.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 2.5e-31 140.6 270 36.7
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 6.8e-29 132.5 268 37.3
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.6e-28 130.6 122 59.8
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 3.1e-26 123.6 152 53.3
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.6e-25 121.3 89 61.8
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.1e-23 115.2 146 52.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.0e-22 109.0 219 40.6
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.7e-20 102.8 155 40.6
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 5.7e-20 102.8 155 40.6
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-18 98.6 113 46.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.8e-18 97.8 236 32.2
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 1.7e-16 91.3 47 80.9
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.9e-15 87.8 125 48.0
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.5e-15 86.3 122 40.2
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 3.4e-12 77.0 148 41.2
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 3.7e-11 73.6 51 62.7
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.3e-11 72.8 180 34.4


User provided reference genes

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