Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 0.0e+00 1076.2 504 100.0
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 6.9e-312 1073.2 504 99.8
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 6.8e-250 867.1 518 79.9
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 1.0e-245 853.2 521 76.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.7e-243 845.1 486 80.5
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.6e-238 829.3 525 75.0
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 3.4e-233 811.6 499 75.4
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 9.8e-233 810.1 509 73.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 2.2e-232 808.9 514 72.4
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.4e-231 805.4 514 72.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 7.8e-230 800.4 570 68.6
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 1.7e-229 799.3 487 76.6
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 1.7e-229 799.3 452 80.5
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 8.6e-229 797.0 470 78.1
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 2.1e-227 792.3 466 77.7
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 6.2e-227 790.8 462 77.1
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 1.4e-226 789.6 447 80.1
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 1.8e-226 789.3 529 70.5
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 4.0e-226 788.1 464 77.8
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 5.2e-226 787.7 516 70.9
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 6.8e-226 787.3 514 71.4
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 8.9e-226 786.9 511 71.2
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 4.4e-225 784.6 509 72.3
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.4e-223 779.6 447 78.3
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 3.2e-223 778.5 466 76.8
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 3.2e-223 778.5 490 72.9
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 5.4e-223 777.7 482 74.5
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 7.0e-223 777.3 524 71.2
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 2.7e-222 775.4 488 72.7
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 2.7e-222 775.4 505 70.5
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 7.8e-222 773.9 467 76.0
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 2.3e-221 772.3 483 73.9
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 3.0e-221 771.9 503 71.6
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 5.0e-221 771.2 518 70.7
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 1.5e-220 769.6 435 79.1
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 1.5e-220 769.6 432 79.4
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 1.9e-220 769.2 459 75.6
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 3.3e-220 768.5 512 70.1
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 5.6e-220 767.7 447 77.9
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 1.2e-219 766.5 456 76.3
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.2e-219 766.5 462 74.5
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 1.6e-219 766.1 512 70.3
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.6e-219 766.1 465 75.3
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 1.4e-218 763.1 507 70.4
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 1.8e-218 762.7 456 76.5
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 2.3e-218 762.3 452 76.5
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 3.1e-218 761.9 476 73.1
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 3.1e-218 761.9 452 75.2
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.8e-218 760.8 493 71.4
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.5e-217 759.6 428 79.2
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 2.0e-217 759.2 495 72.1
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.4e-217 758.1 512 68.8
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 7.5e-217 757.3 474 73.2
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 1.3e-216 756.5 452 76.1
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 2.9e-216 755.4 460 75.2
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 6.4e-216 754.2 511 68.5
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 6.4e-216 754.2 510 69.2
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 1.1e-215 753.4 457 75.3
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 1.6e-214 749.6 459 74.1
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 2.1e-214 749.2 481 73.6
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 6.0e-214 747.7 474 73.8
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 1.0e-213 746.9 470 72.1
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 1.7e-213 746.1 463 73.2
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 1.7e-213 746.1 436 75.7
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 6.6e-213 744.2 465 74.0
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 3.3e-212 741.9 458 73.8
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 7.3e-212 740.7 447 75.6
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 8.1e-211 737.3 455 73.0
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 1.1e-210 736.9 447 74.3
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 1.1e-210 736.9 511 66.1
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 1.4e-210 736.5 430 76.7
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 2.3e-210 735.7 451 73.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.0e-210 734.9 501 70.1
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 6.8e-210 734.2 436 74.3
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 3.4e-209 731.9 474 70.0
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 4.4e-209 731.5 474 70.0
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 5.8e-209 731.1 452 72.6
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 2.9e-208 728.8 437 73.7
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 2.9e-208 728.8 452 72.1
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 4.9e-208 728.0 447 73.4
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 6.4e-208 727.6 503 67.6
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 1.1e-207 726.9 475 70.1
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 1.1e-207 726.9 475 70.1
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.1e-207 724.9 496 69.4
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 3.0e-205 718.8 494 69.0
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.1e-204 716.8 463 71.1
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 2.4e-202 709.1 469 69.5
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 9.9e-201 703.7 430 73.7
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.9e-200 702.2 443 68.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 8.4e-200 700.7 453 74.4
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 7.1e-199 697.6 588 59.0
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 2.7e-198 695.7 549 62.5
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 8.7e-197 690.6 427 70.5
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.8e-194 682.9 404 76.0
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.4e-194 682.6 444 67.1
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 4.9e-192 674.9 378 79.9
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 1.1e-188 663.7 449 68.6
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 8.1e-187 657.5 388 76.5
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.9e-184 648.3 443 68.8
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 3.2e-183 645.6 517 62.1
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-181 640.2 380 75.3
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.3e-181 640.2 380 75.3
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.8e-181 639.8 343 83.7
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 3.3e-180 635.6 408 73.5
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 4.8e-179 631.7 373 77.7
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 7.9e-174 614.4 380 73.7
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.3e-171 607.1 325 82.2
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 6.3e-171 604.7 518 58.3
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.4e-170 603.6 417 64.5
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 1.0e-168 597.4 460 59.8
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 4.2e-167 592.0 430 66.0
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 1.6e-166 590.1 428 64.7
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.6e-163 580.1 455 59.3
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.1e-151 540.8 444 55.4
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 7.2e-151 538.1 396 59.8
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 7.9e-150 534.6 431 61.3
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 3.6e-142 509.2 320 70.0
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 4.8e-139 498.8 418 56.7
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 2.0e-132 476.9 267 78.3
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.1e-130 469.5 256 82.8
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 6.2e-110 402.1 218 80.3
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.4e-101 374.4 454 41.0
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 3.6e-86 323.2 184 79.9
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 3.4e-76 290.0 162 80.2
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 5.1e-72 276.2 226 64.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 1.5e-71 274.6 429 40.1
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 4.9e-67 259.6 357 40.6
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.2e-66 256.5 148 77.7
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 5.1e-56 223.0 149 69.1
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.3e-54 218.4 110 83.6
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.5e-52 211.5 148 58.8
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.8e-48 198.0 118 75.4
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 7.2e-42 176.0 109 73.4
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 3.7e-38 163.7 107 70.1
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 7.7e-36 156.0 185 44.9
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 2.0e-31 141.4 186 43.5
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 2.7e-17 94.4 60 68.3
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 3.6e-17 94.0 61 65.6
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.4e-08 65.5 119 36.1
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 4.4e-07 60.5 41 63.4


User provided reference genes

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