Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027625 Camellia sinensis var. sinensis HOM05D006588 ORTHO05D008272 1.5e-256 889.0 449 100.0
Rhsim05G0031800 Rhododendron simsii HOM05D006588 ORTHO05D008272 2.7e-181 639.0 449 71.9
Dinv36733 Davidia involucrata HOM05D006588 ORTHO05D008272 7.3e-179 630.9 419 75.4
Hma1.2p1_1074F.1_g254320 Hydrangea macrophylla HOM05D006588 ORTHO05D008272 1.4e-177 626.7 449 71.5
vmacro10821 Vaccinium macrocarpon HOM05D006588 ORTHO05D008272 1.2e-168 597.0 484 65.9
Atru.chr7.1520 Acer truncatum HOM05D006588 ORTHO05D008272 9.8e-168 594.0 448 65.0
Thecc.09G094100 Theobroma cacao HOM05D006588 ORTHO05D008272 2.2e-167 592.8 449 64.6
TAR636G2459 Trochodendron aralioides HOM05D006588 ORTHO05D008272 2.3e-164 582.8 450 63.8
Lj4C316T0 Lonicera japonica HOM05D006588 ORTHO05D008272 2.5e-163 579.3 452 64.2
Gohir.D06G069300 Gossypium hirsutum HOM05D006588 ORTHO05D008272 2.6e-160 569.3 449 61.7
Gorai.010G080900 Gossypium raimondii HOM05D006588 ORTHO05D008272 2.6e-160 569.3 449 61.7
Manes.03G030400 Manihot esculenta HOM05D006588 ORTHO05D008272 1.3e-159 567.0 449 61.9
Duzib150G1363 Durio zibethinus HOM05D006588 ORTHO05D008272 1.1e-158 563.9 441 62.8
MSTRG.10583 Avicennia marina HOM05D006588 ORTHO05D008272 1.3e-156 557.0 449 61.9
Ciclev10008264m.g Citrus clementina HOM05D006588 ORTHO05D008272 1.6e-154 550.1 451 62.1
Cc06_g10980 Coffea canephora HOM05D006588 ORTHO05D008272 8.1e-154 547.7 448 61.2
Oeu018228.1 Olea europaea HOM05D006588 ORTHO05D008272 8.1e-154 547.7 460 61.3
QL02p063459 Quercus lobata HOM05D006588 ORTHO05D008272 1.3e-151 540.4 446 61.0
Migut.K00574 Erythranthe guttata HOM05D006588 ORTHO05D008272 9.2e-150 534.3 453 60.7
Nn6g35407 Nelumbo nucifera HOM05D006588 ORTHO05D008272 5.6e-147 525.0 441 59.9
Lalb_Chr09g0331761 Lupinus albus HOM05D006588 ORTHO05D008272 1.4e-145 520.4 451 57.4
Cfa003132 Carpinus fangiana HOM05D006588 ORTHO05D008272 2.4e-145 519.6 438 58.9
TWI34G1517 Tripterygium wilfordii HOM05D006588 ORTHO05D008272 2.9e-143 512.7 447 60.4
Actinidia39746 Actinidia chinensis HOM05D006588 ORTHO05D008272 6.4e-143 511.5 449 61.9
SalBow1G2363 Salvia bowleyana HOM05D006588 ORTHO05D008272 8.4e-143 511.1 449 57.9
SalBow1G2795 Salvia bowleyana HOM05D006588 ORTHO05D008272 8.4e-143 511.1 449 57.9
Glyma.08G030700 Glycine max HOM05D006588 ORTHO05D008272 6.6e-140 501.5 451 56.3
ClCG11G012860 Citrullus lanatus HOM05D006588 ORTHO05D008272 2.5e-139 499.6 445 58.0
Sc15g0003870 Simmondsia chinensis HOM05D006588 ORTHO05D008272 4.3e-139 498.8 451 55.2
MBI04_g06220_MAGBIO Magnolia biondii HOM05D006588 ORTHO05D008272 7.3e-139 498.0 454 57.0
Sed0004057 Sechium edule HOM05D006588 ORTHO05D008272 9.6e-139 497.7 446 57.6
Ca_17389_v3 Cicer arietinum L. HOM05D006588 ORTHO05D008272 1.6e-138 496.9 454 54.8
SGA_v2.0_scaffold28G11949 Striga asiatica HOM05D006588 ORTHO05D008272 1.6e-138 496.9 481 52.8
VMungo0251G0425 Vigna mungo HOM05D006588 ORTHO05D008272 3.6e-138 495.7 450 55.3
TPR.G25442 Trifolium pratense HOM05D006588 ORTHO05D008272 8.1e-138 494.6 457 55.1
Phvul.002G305400 Phaseolus vulgaris HOM05D006588 ORTHO05D008272 1.8e-137 493.4 450 55.6
Psat7g018800 Pisum sativum HOM05D006588 ORTHO05D008272 1.8e-137 493.4 458 53.9
ECA240G3150 Erigeron canadensis HOM05D006588 ORTHO05D008272 4.0e-137 492.3 451 54.1
CsaV3_5G029260 Cucumis sativus L. HOM05D006588 ORTHO05D008272 1.7e-135 486.9 445 56.4
Lsat_1_v5_gn_7_39041 Lactuca sativa HOM05D006588 ORTHO05D008272 1.4e-134 483.8 452 52.9
Lj4g0006334 Lotus japonicus HOM05D006588 ORTHO05D008272 1.9e-134 483.4 451 54.3
CANSAT56G2228 Cannabis sativa HOM05D006588 ORTHO05D008272 2.4e-134 483.0 450 55.8
CANSAT56G3648 Cannabis sativa HOM05D006588 ORTHO05D008272 6.0e-133 478.4 450 55.3
HanXRQChr09g0238251 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-131 473.0 456 51.8
unitig_699.g19309 Utricularia gibba HOM05D006588 ORTHO05D008272 1.3e-130 470.7 446 54.9
THA.LOC104814599 Tarenaya hassleriana HOM05D006588 ORTHO05D008272 3.5e-125 452.6 439 54.4
AT4G29420 Arabidopsis thaliana HOM05D006588 ORTHO05D008272 1.3e-124 450.7 449 51.9
BolC1t00966H Brassica oleracea HOM05D006588 ORTHO05D008272 1.8e-124 450.3 449 52.3
A01p08610 Brassica napus HOM05D006588 ORTHO05D008272 2.3e-124 449.9 449 52.1
BraA01t00812Z Brassica rapa HOM05D006588 ORTHO05D008272 6.7e-124 448.4 449 51.9
C01p10080 Brassica napus HOM05D006588 ORTHO05D008272 5.6e-123 445.3 449 51.4
AL7G22970 Arabidopsis lyrata HOM05D006588 ORTHO05D008272 1.8e-121 440.3 448 50.7
Gohir.A06G070700 Gossypium hirsutum HOM05D006588 ORTHO05D008272 5.3e-121 438.7 314 66.9
COL.COLO4_18239 Corchorus olitorius HOM05D006588 ORTHO05D008272 1.2e-120 437.6 449 50.8
Carub.0007s1112 Capsella rubella HOM05D006588 ORTHO05D008272 1.5e-120 437.2 450 50.4
Sp7g27300 Schrenkiella parvula HOM05D006588 ORTHO05D008272 2.0e-120 436.8 451 50.3
Thhalv10025196m.g Eutrema salsugineum HOM05D006588 ORTHO05D008272 2.2e-119 433.3 451 49.7
Aa31LG2G21010 Aethionema arabicum HOM05D006588 ORTHO05D008272 6.5e-119 431.8 453 49.9
CANSAT56G0790 Cannabis sativa HOM05D006588 ORTHO05D008272 8.4e-119 431.4 412 55.3
Eucgr.C00929 Eucalyptus grandis HOM05D006588 ORTHO05D008272 4.6e-117 425.6 440 50.9
CiPaw.03G219600 Carya illinoinensis HOM05D006588 ORTHO05D008272 7.9e-117 424.9 316 65.5
CARHR237240 Cardamine hirsuta HOM05D006588 ORTHO05D008272 7.4e-115 418.3 452 49.1
Lsat_1_v5_gn_7_38281 Lactuca sativa HOM05D006588 ORTHO05D008272 3.2e-110 402.9 455 45.5
Rhsim05G0031600 Rhododendron simsii HOM05D006588 ORTHO05D008272 3.3e-107 392.9 314 65.6
Medtr8g101930 Medicago truncatula HOM05D006588 ORTHO05D008272 1.3e-106 391.0 402 50.7
CDE06G2665 Ceratophyllum demersum HOM05D006588 ORTHO05D008272 2.8e-106 389.8 437 48.1
Lsat_1_v5_gn_7_37981 Lactuca sativa HOM05D006588 ORTHO05D008272 7.2e-102 375.2 452 42.9
Lsat_1_v5_gn_7_38001 Lactuca sativa HOM05D006588 ORTHO05D008272 7.2e-102 375.2 452 42.9
Lsat_1_v5_gn_7_38780 Lactuca sativa HOM05D006588 ORTHO05D008272 2.1e-101 373.6 474 42.8
Lsat_1_v5_gn_7_38040 Lactuca sativa HOM05D006588 ORTHO05D008272 1.8e-100 370.5 451 44.8
HPP92_003983 Vanilla planifolia HOM05D006588 ORTHO05D008272 1.4e-94 350.9 453 41.7
ATR0789G046 Amborella trichopoda HOM05D006588 ORTHO05D008272 3.9e-92 342.8 447 43.0
Haze_25873 Corylus avellana HOM05D006588 ORTHO05D008272 1.3e-87 327.8 290 57.6
HanXRQChr03g0060991 Helianthus annuus HOM05D006588 ORTHO05D008272 5.5e-86 322.4 452 41.2
Actinidia25278 Actinidia chinensis HOM05D006588 ORTHO05D008272 9.4e-86 321.6 193 81.9
Lsat_1_v5_gn_7_38020 Lactuca sativa HOM05D006588 ORTHO05D008272 2.0e-83 313.9 504 38.1
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 9.7e-83 311.6 442 42.1
Eucgr.L03123 Eucalyptus grandis HOM05D006588 ORTHO05D008272 5.3e-81 305.8 508 38.4
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 2.7e-80 303.5 449 39.2
MELO3C011777.2 Cucumis melo HOM05D006588 ORTHO05D008272 7.7e-80 302.0 290 53.8
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 2.9e-79 300.1 451 38.8
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-78 297.0 452 38.9
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 2.5e-78 297.0 449 39.4
SEGI_25649 Sequoiadendron giganteum HOM05D006588 ORTHO05D008272 4.0e-76 289.7 450 36.7
CANSAT56G3251 Cannabis sativa HOM05D006588 ORTHO05D008272 1.5e-75 287.7 277 54.2
BcaC09g51727 Brassica carinata HOM05D006588 ORTHO05D008272 6.6e-71 272.3 295 49.8
HanXRQChr05g0142321 Helianthus annuus HOM05D006588 ORTHO05D008272 2.8e-69 266.9 405 42.2
Zm00001eb121140 Zea mays HOM05D006588 ORTHO05D008272 9.2e-65 251.9 446 37.2
Duzib168G2000 Durio zibethinus HOM05D006588 ORTHO05D002622 5.0e-63 246.1 198 60.6
Nn7g36587 Nelumbo nucifera HOM05D006588 ORTHO05D008272 1.3e-58 231.5 223 54.3
Os01g0193500 Oryza sativa ssp. japonica HOM05D006588 ORTHO05D008272 1.7e-58 231.1 341 40.8
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 1.8e-52 211.1 313 41.2
HanXRQChr03g0060621 Helianthus annuus HOM05D006588 ORTHO05D008272 1.9e-46 191.0 250 45.2
Lsat_1_v5_gn_7_38181 Lactuca sativa HOM05D006588 ORTHO05D008272 7.3e-46 189.1 438 33.6
Rhsim05G0031700 Rhododendron simsii HOM05D006588 ORTHO05D008272 6.2e-45 186.0 268 43.3
Lsat_1_v5_gn_7_39080 Lactuca sativa HOM05D006588 ORTHO05D008272 6.4e-42 176.0 180 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3249 Anthoceros agrestis HOM05D006588 ORTHO05D008272 1.3e-34 151.8 302 32.8
Pp3c2_16400 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.4e-26 122.9 523 22.2
Mapoly0117s0028 Marchantia polymorpha HOM05D006588 ORTHO05D008272 1.1e-25 122.1 421 24.0
Mapoly0029s0113 Marchantia polymorpha HOM05D006588 ORTHO05D008272 7.1e-25 119.4 466 23.8
HanXRQChr03g0061001 Helianthus annuus HOM05D006588 ORTHO05D008272 9.3e-25 119.0 148 45.9
Pp3c1_20980 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.0e-24 116.3 521 21.7
Pp3c21_900 Physcomitrium patens HOM05D006588 ORTHO05D008272 7.9e-24 115.9 275 29.1
unitig_699.g19307 Utricularia gibba HOM05D006588 ORTHO05D008272 1.1e-22 112.1 123 50.4
SalBow8G2706 Salvia bowleyana HOM05D000076 ORTHO05D013329 2.1e-21 107.8 87 59.8
Pp3c22_1680 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.2e-21 106.3 298 26.8
Pp3c19_6110 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-20 105.1 326 26.7
Pp3c10_4240 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.4e-20 104.4 392 23.0
Pp3c4_15950 Physcomitrium patens HOM05D006588 ORTHO05D008272 4.0e-20 103.6 377 26.0
Pp3c21_980 Physcomitrium patens HOM05D006588 ORTHO05D008272 2.0e-19 101.3 331 24.5
Mapoly0117s0029 Marchantia polymorpha HOM05D006588 ORTHO05D008272 5.8e-19 99.8 436 20.9
Pp3c13_20140 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.4e-17 95.1 223 25.6
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.2e-16 92.0 66 62.1
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-16 90.5 65 60.0
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-16 90.5 66 62.1
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.5e-16 90.5 66 62.1
Pp3c18_21550 Physcomitrium patens HOM05D006588 ORTHO05D008272 3.5e-16 90.5 199 27.6
Pp3c21_1000 Physcomitrium patens HOM05D006588 ORTHO05D008272 6.7e-15 86.3 317 23.3
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-13 81.6 59 59.3
Lsat_1_v5_gn_7_38261 Lactuca sativa HOM05D006588 ORTHO05D008272 6.2e-13 79.7 140 32.1
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.4e-11 73.9 56 51.8
Haze_18080 Corylus avellana HOM05D006588 ORTHO05D008272 6.5e-10 69.7 37 75.7
unitig_699.g19308 Utricularia gibba HOM05D006588 ORTHO05D008272 1.1e-09 68.9 135 33.3
Glyma.05G223602 Glycine max HOM05D006588 ORTHO05D008272 3.5e-08 63.9 99 39.4
Pp3s358_10 Physcomitrium patens HOM05D006588 ORTHO05D008272 1.0e-07 62.4 190 24.2
HanXRQChr03g0060641 Helianthus annuus HOM05D006588 ORTHO05D008272 1.3e-07 62.0 67 34.3
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 9.6e-06 55.8 246 28.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 9.6e-06 55.8 246 26.8


User provided reference genes

Program Settings