Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.7e-55 218.4 106 100.0
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.2e-45 184.9 97 90.7
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.1e-32 143.3 104 62.5
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.6e-31 139.4 104 60.6
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 5.6e-29 131.0 81 67.9
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 1.6e-28 129.4 106 58.5
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 2.1e-28 129.0 106 58.5
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 6.2e-28 127.5 112 57.1
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 8.0e-28 127.1 107 57.9
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 3.1e-27 125.2 112 56.2
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 3.1e-27 125.2 93 61.3
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 6.8e-27 124.0 103 58.3
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 2.0e-26 122.5 106 55.7
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 2.6e-26 122.1 97 56.7
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 3.4e-26 121.7 94 56.4
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 4.4e-26 121.3 104 55.8
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 4.4e-26 121.3 96 61.5
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 7.5e-26 120.6 103 52.4
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 7.5e-26 120.6 100 55.0
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 2.9e-25 118.6 104 56.7
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 2.9e-25 118.6 80 63.8
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 2.9e-25 118.6 108 57.4
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 3.7e-25 118.2 106 52.8
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.4e-24 115.5 106 52.8
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 7.0e-24 114.0 105 55.2
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 7.0e-24 114.0 107 51.4
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 9.2e-24 113.6 102 50.0
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 9.2e-24 113.6 102 50.0
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 1.2e-23 113.2 88 56.8
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 1.2e-23 113.2 92 54.3
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 2.7e-23 112.1 90 55.6
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 3.5e-23 111.7 106 51.9
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 4.6e-23 111.3 103 52.4
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 4.6e-23 111.3 102 48.0
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 6.0e-23 110.9 113 48.7
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 6.0e-23 110.9 100 52.0
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.3e-22 109.8 105 51.4
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 1.7e-22 109.4 103 49.5
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 3.0e-22 108.6 105 52.4
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 3.0e-22 108.6 113 51.3
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 1.1e-21 106.7 103 49.5
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 2.8e-20 102.1 96 51.0
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 8.1e-20 100.5 108 48.1
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 1.1e-19 100.1 99 50.5
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 3.1e-19 98.6 106 48.1
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 4.0e-19 98.2 108 47.2
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 5.2e-19 97.8 107 48.6
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 4.4e-18 94.7 76 56.6
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 9.8e-18 93.6 73 56.2
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 2.2e-17 92.4 86 51.2
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 3.7e-17 91.7 114 43.9
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 2.4e-16 89.0 102 46.1
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 2.4e-16 89.0 69 56.5
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 3.2e-16 88.6 104 42.3
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 5.4e-16 87.8 104 43.3
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 5.4e-16 87.8 102 46.1
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 5.4e-16 87.8 102 46.1
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 5.4e-16 87.8 102 46.1
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 5.4e-16 87.8 113 43.4
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 1.6e-15 86.3 93 44.1
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 4.6e-15 84.7 102 44.1
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 4.6e-15 84.7 102 44.1
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 4.6e-15 84.7 113 39.8
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 7.8e-15 84.0 94 45.7
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 7.8e-15 84.0 111 40.5
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 7.8e-15 84.0 80 46.2
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 1.7e-14 82.8 91 44.0
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 1.7e-14 82.8 91 44.0
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 1.7e-14 82.8 91 44.0
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 1.7e-14 82.8 115 39.1
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 1.7e-14 82.8 107 42.1
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 3.0e-14 82.0 58 60.3
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 3.9e-14 81.6 104 42.3
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 1.6e-12 76.3 95 42.1
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 1.8e-11 72.8 103 36.9
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 5.2e-11 71.2 87 42.5
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 1.2e-10 70.1 84 42.9
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 1.5e-10 69.7 99 39.4
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 9.9e-10 67.0 84 41.7
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 9.9e-10 67.0 84 41.7
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 1.3e-06 56.6 67 43.3


User provided reference genes

Program Settings