Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.9e-112 407.1 207 100.0
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.4e-89 333.2 242 75.2
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.4e-89 333.2 242 75.2
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.7e-88 328.9 241 74.7
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 6.7e-63 244.6 240 56.2
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 5.7e-62 241.5 240 56.7
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 4.7e-56 221.9 233 56.7
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 1.4e-55 220.3 240 53.3
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 2.1e-48 196.4 242 49.2
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 3.0e-47 192.6 242 49.6
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 2.0e-43 179.9 241 45.6
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 8.6e-42 174.5 237 46.8
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 3.3e-41 172.6 241 44.4
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 9.5e-41 171.0 240 43.8
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 9.5e-41 171.0 241 46.9
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 1.2e-40 170.6 241 45.6
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 1.6e-40 170.2 245 45.7
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 1.6e-40 170.2 238 47.1
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 2.8e-40 169.5 235 48.5
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.8e-40 169.5 238 44.1
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.8e-40 169.5 238 44.1
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 3.6e-40 169.1 240 44.2
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 4.7e-40 168.7 240 41.2
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 1.0e-39 167.5 240 43.8
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 1.4e-39 167.2 241 44.4
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 1.8e-39 166.8 243 47.7
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.8e-39 166.8 243 47.7
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 2.3e-39 166.4 241 44.0
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.3e-39 166.4 241 46.1
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 3.0e-39 166.0 241 45.6
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.2e-38 164.1 241 43.6
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 2.0e-38 163.3 237 47.7
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.6e-38 162.9 241 45.2
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 6.4e-37 158.3 238 42.9
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 6.4e-37 158.3 240 42.1
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 1.4e-36 157.1 239 41.0
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 2.4e-36 156.4 240 42.1
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 2.0e-35 153.3 236 39.8
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 2.7e-35 152.9 240 41.2
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 3.5e-35 152.5 228 44.7
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 6.0e-35 151.8 236 42.8
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 7.8e-35 151.4 238 40.3
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 3.9e-34 149.1 240 41.7
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 5.0e-34 148.7 240 40.8
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.1e-33 147.5 241 38.6
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 1.5e-33 147.1 232 40.9
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 2.5e-33 146.4 232 43.1
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 9.5e-33 144.4 240 40.8
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 2.8e-32 142.9 238 39.5
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 2.8e-32 142.9 237 38.0
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 2.8e-32 142.9 237 37.6
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 6.2e-32 141.7 238 39.1
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 1.1e-31 141.0 237 40.9
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 1.4e-31 140.6 237 40.9
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 1.8e-31 140.2 238 39.5
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 3.1e-31 139.4 242 37.6
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 8.9e-31 137.9 236 39.8
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 8.9e-31 137.9 234 41.5
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 1.5e-30 137.1 236 39.4
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 2.6e-30 136.3 238 39.1
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 9.8e-30 134.4 236 39.0
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.2e-29 133.3 238 39.5
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 2.9e-29 132.9 239 38.1
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 4.9e-29 132.1 239 38.5
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 2.4e-28 129.8 235 37.9
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 4.1e-28 129.0 235 39.1
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 4.1e-28 129.0 239 38.1
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 5.4e-28 128.6 240 39.2
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 1.2e-27 127.5 240 38.3
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 3.5e-27 125.9 239 38.5
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 6.0e-27 125.2 239 38.1
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 6.0e-27 125.2 239 37.2
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 1.3e-26 124.0 239 35.6
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 3.9e-26 122.5 240 35.0
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 5.1e-26 122.1 234 37.2
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 2.5e-25 119.8 236 37.7
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 3.3e-25 119.4 240 34.6
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 2.8e-24 116.3 240 35.8
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 2.3e-23 113.2 172 45.9
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.3e-23 113.2 242 36.0
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 4.0e-23 112.5 247 36.0
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 6.8e-23 111.7 235 37.4
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 6.8e-23 111.7 239 34.7
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 5.8e-22 108.6 235 37.4
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 5.8e-22 108.6 235 37.4
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 5.8e-22 108.6 178 37.1
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 7.5e-22 108.2 234 35.5
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 9.9e-22 107.8 237 36.7
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 9.9e-22 107.8 231 35.5
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 1.3e-21 107.5 234 35.5
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 2.2e-21 106.7 232 36.2
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 4.9e-21 105.5 233 35.6
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 6.4e-21 105.1 237 36.3
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 2.4e-20 103.2 232 37.5
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 2.4e-20 103.2 223 35.0
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 5.4e-20 102.1 240 35.8
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 1.6e-19 100.5 234 34.6
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 1.8e-15 87.0 227 31.7
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 6.8e-15 85.1 226 33.6
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 3.4e-14 82.8 236 31.8
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 5.8e-14 82.0 133 40.6
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.9e-13 79.7 241 32.0
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 3.8e-13 79.3 228 30.7
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 6.4e-13 78.6 147 38.8
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.5e-09 67.4 90 42.2
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.8e-06 55.5 134 32.1
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 9.9e-06 54.7 92 40.2


User provided reference genes

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