Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 8.6e-279 963.0 478 100.0
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.3e-229 799.7 473 83.1
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.2e-229 797.3 478 82.8
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.5e-227 791.2 467 84.2
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 1.4e-225 786.2 476 82.4
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 2.1e-224 782.3 477 82.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.0e-223 780.0 478 79.9
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.0e-223 780.0 470 81.9
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-220 769.6 478 79.5
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.9e-218 761.9 478 79.5
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.1e-217 760.0 482 79.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 9.7e-214 746.9 480 77.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 8.2e-213 743.8 466 77.9
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 8.2e-213 743.8 478 76.6
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.5e-211 739.6 448 78.8
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.6e-211 738.8 455 77.6
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.0e-210 736.9 453 77.7
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.7e-210 736.1 460 78.0
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 3.8e-210 734.9 450 81.1
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 5.0e-210 734.6 458 77.7
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 5.0e-210 734.6 462 77.7
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.5e-210 734.2 478 75.7
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 8.5e-210 733.8 457 78.8
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 1.1e-209 733.4 457 78.3
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 2.5e-209 732.3 457 77.5
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 5.5e-209 731.1 453 77.3
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 7.2e-209 730.7 474 77.8
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 7.2e-209 730.7 472 77.1
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 9.4e-209 730.3 455 77.1
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 9.4e-209 730.3 473 77.4
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.2e-208 729.9 462 77.5
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 2.7e-208 728.8 447 79.2
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.6e-208 728.4 473 77.2
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 4.6e-208 728.0 448 79.0
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 4.6e-208 728.0 448 79.5
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 6.1e-208 727.6 462 77.3
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.8e-207 726.1 448 78.6
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 2.3e-207 725.7 463 76.7
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 8.8e-207 723.8 470 76.6
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.1e-206 723.4 466 76.2
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.5e-206 723.0 478 74.5
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.0e-206 722.6 463 76.7
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.5e-206 722.2 460 76.5
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 2.5e-206 722.2 448 77.9
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.5e-206 722.2 463 75.8
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 5.7e-206 721.1 473 76.1
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.3e-205 719.9 455 78.9
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.7e-205 719.5 489 72.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 4.8e-205 718.0 461 74.8
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 6.3e-205 717.6 462 76.8
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.4e-204 716.5 453 78.1
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.1e-204 715.3 460 75.7
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 5.3e-204 714.5 447 78.7
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 6.9e-204 714.1 447 78.5
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.5e-203 713.0 450 77.1
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 2.0e-203 712.6 433 79.7
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.0e-203 712.6 458 76.6
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.4e-203 711.8 450 77.8
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.4e-203 711.8 450 77.8
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.5e-203 711.4 464 75.9
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.5e-203 711.4 464 75.9
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.3e-202 709.9 453 76.8
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.8e-202 708.4 454 76.7
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 6.5e-202 707.6 457 75.5
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-201 706.8 470 73.6
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.9e-201 706.1 462 75.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 1.9e-201 706.1 454 76.7
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-201 705.3 450 76.7
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-201 705.3 450 76.7
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.2e-201 705.3 450 76.4
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 7.2e-201 704.1 429 78.8
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 7.2e-201 704.1 481 74.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 9.4e-201 703.7 427 79.2
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.2e-200 703.4 445 76.2
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 1.6e-200 703.0 462 73.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.1e-200 702.6 453 75.7
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.1e-200 702.6 461 74.2
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 7.9e-200 700.7 450 77.1
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.4e-199 699.9 447 75.8
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 5.1e-199 698.0 458 74.2
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 6.7e-199 697.6 429 78.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 6.7e-199 697.6 465 74.2
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.8e-197 692.2 456 72.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 2.8e-197 692.2 460 72.8
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 8.2e-197 690.6 455 73.8
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.4e-196 689.9 449 74.8
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.4e-196 689.9 457 73.3
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 1.8e-196 689.5 457 73.7
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.8e-196 689.5 450 72.9
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.1e-196 688.3 449 74.6
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.1e-196 688.3 468 72.2
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 5.3e-196 688.0 469 72.3
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 2.0e-195 686.0 458 73.8
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 5.9e-195 684.5 429 77.2
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 1.0e-194 683.7 457 73.1
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 3.8e-194 681.8 471 70.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.8e-194 681.8 452 73.7
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 1.1e-193 680.2 458 72.7
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 3.2e-193 678.7 436 75.7
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 7.2e-193 677.6 451 73.2
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 9.4e-193 677.2 448 72.8
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 6.1e-192 674.5 452 71.7
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 6.1e-192 674.5 444 74.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 3.0e-191 672.2 448 71.9
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 5.2e-191 671.4 470 70.4
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.8e-191 670.6 413 78.7
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.0e-190 669.5 446 74.2
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 2.0e-190 669.5 431 76.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 1.3e-189 666.8 454 73.6
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.8e-189 665.6 468 70.1
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.8e-189 664.8 443 71.6
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.1e-188 663.7 462 68.8
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.8e-188 662.9 411 78.6
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.4e-188 662.5 444 71.6
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 9.1e-188 660.6 446 71.5
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 7.7e-187 657.5 445 71.5
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 7.7e-187 657.5 451 71.2
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.3e-186 656.8 432 72.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.7e-186 656.4 449 70.2
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.1e-185 653.7 441 71.7
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 1.1e-185 653.7 441 71.7
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.1e-185 653.7 441 71.9
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 3.2e-185 652.1 441 71.4
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.2e-184 650.2 407 76.9
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 2.1e-184 649.4 444 70.7
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.7e-184 649.0 429 71.6
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.7e-184 648.3 407 76.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 6.1e-184 647.9 446 70.0
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.0e-183 645.2 446 69.7
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 5.2e-183 644.8 446 69.7
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.6e-182 642.5 446 69.5
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.5e-179 632.1 446 70.4
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 4.5e-179 631.7 389 79.2
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 1.7e-178 629.8 446 70.4
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 5.0e-178 628.2 443 70.7
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.0e-176 620.9 365 81.1
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.0e-175 619.0 469 66.5
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 4.0e-175 618.6 390 76.2
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.6e-174 615.9 433 67.9
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.6e-171 606.7 389 76.3
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 5.9e-171 604.7 383 76.5
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.7e-165 586.6 370 76.2
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 5.4e-156 555.1 388 70.4
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.6e-155 553.5 439 62.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.1e-153 547.4 448 63.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 3.7e-149 532.3 468 60.7
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.1e-148 528.9 456 57.7
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.7e-141 505.8 419 61.3
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-136 490.7 468 56.0
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 9.9e-134 481.1 419 57.5
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 1.6e-120 437.2 288 74.0
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.2e-118 431.0 326 64.7
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.9e-116 423.7 434 52.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-109 401.0 274 69.7
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 3.8e-109 399.4 239 79.1
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 9.0e-103 378.3 455 45.1
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.7e-101 374.0 231 76.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 8.7e-98 361.7 435 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.1e-91 340.5 389 45.8
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 5.2e-74 282.7 162 85.2
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 9.7e-73 278.5 271 58.3
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 5.2e-58 229.6 148 77.7
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 3.4e-49 200.3 135 71.9
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.4e-47 194.1 113 80.5
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 2.0e-46 191.0 462 31.8
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 4.4e-41 173.3 458 31.4
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.2e-40 171.0 95 82.1
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 7.6e-25 119.4 73 78.1
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 5.4e-23 113.2 84 63.1
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 6.4e-16 89.7 67 58.2
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 4.6e-14 83.6 79 57.0
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.6e-09 67.8 194 29.4
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.5e-09 67.0 198 30.8
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 7.6e-09 66.2 203 28.6
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 7.6e-09 66.2 195 27.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.2e-08 64.7 43 67.4
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 4.9e-08 63.5 43 65.1
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 6.4e-08 63.2 194 24.7
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 6.4e-08 63.2 197 29.4
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 8.4e-08 62.8 194 24.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 7.1e-07 59.7 197 27.4


User provided reference genes

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