Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 0.0e+00 1273.8 675 100.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.1e-202 710.7 789 56.5
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.2e-196 690.6 776 57.1
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.6e-192 674.5 737 58.6
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 6.0e-185 651.7 752 53.7
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.3e-151 539.3 634 55.8
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.6e-145 520.8 596 55.9
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.1e-138 498.0 735 47.6
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.1e-119 434.9 780 43.3
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.4e-119 433.0 761 43.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 3.5e-116 423.3 760 43.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 5.5e-114 416.0 748 43.0
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.5e-111 407.9 670 43.1
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 3.3e-111 406.8 758 41.8
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 9.7e-111 405.2 732 41.8
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 4.8e-110 402.9 664 42.8
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.0e-107 395.2 739 41.4
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.5e-106 391.3 759 40.1
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 1.5e-103 381.3 690 43.3
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.5e-103 381.3 775 39.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 9.8e-103 378.6 675 41.3
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.2e-102 377.5 667 41.1
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 3.7e-102 376.7 728 40.5
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.8e-102 376.3 409 59.2
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 8.3e-102 375.6 707 41.0
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 8.3e-102 375.6 685 39.9
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.2e-100 371.7 739 40.2
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.2e-100 371.7 739 40.2
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 3.5e-100 370.2 675 40.7
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 5.0e-99 366.3 724 39.1
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.6e-99 365.5 359 65.5
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.8e-97 360.5 749 39.8
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 2.3e-96 357.5 697 40.9
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 6.8e-96 355.9 729 39.5
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.3e-94 349.4 779 37.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.2e-92 345.1 769 37.3
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.7e-92 344.0 781 37.4
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.7e-92 344.0 714 39.6
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.7e-92 344.0 748 38.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 7.8e-92 342.4 777 38.9
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.0e-91 342.0 670 40.6
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 1.2e-89 335.1 567 42.7
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-88 331.3 723 39.0
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.8e-88 331.3 694 40.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 5.2e-88 329.7 728 36.8
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.0e-87 327.8 728 39.1
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 3.4e-87 327.0 729 38.4
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 3.4e-87 327.0 623 42.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.2e-86 324.3 692 40.2
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.2e-86 324.3 664 39.3
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 1.8e-85 321.2 688 38.5
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 4.1e-85 320.1 521 43.2
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 3.5e-84 317.0 675 38.8
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 6.6e-83 312.8 677 39.3
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 8.6e-83 312.4 608 41.3
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.5e-82 311.6 512 43.9
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.5e-82 311.6 716 35.8
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 3.3e-82 310.5 659 38.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.8e-80 302.8 686 38.3
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 1.5e-79 301.6 536 42.2
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 3.4e-79 300.4 694 35.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 7.5e-79 299.3 705 38.0
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 1.7e-78 298.1 658 37.8
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.7e-78 297.0 669 37.5
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 5.4e-77 293.1 594 39.4
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 7.0e-77 292.7 222 71.6
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 2.3e-75 287.7 689 35.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 5.0e-75 286.6 744 35.5
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 1.9e-74 284.6 452 44.5
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.8e-72 278.1 645 36.0
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.8e-72 278.1 780 32.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 1.2e-71 275.4 721 35.2
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.2e-71 275.4 720 35.7
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.6e-71 274.2 704 35.7
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.4e-71 273.9 580 38.3
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.4e-71 273.9 532 38.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.9e-70 270.8 725 34.8
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.1e-69 268.9 725 33.1
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.4e-69 268.5 720 34.0
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.6e-68 265.0 729 34.2
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 2.7e-68 264.2 702 33.3
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.5e-68 263.8 665 37.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.0e-67 262.3 654 35.2
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.3e-67 261.2 725 34.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 5.1e-67 260.0 664 35.1
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 5.1e-67 260.0 526 39.9
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 6.6e-67 259.6 789 34.6
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 1.5e-66 258.5 792 33.3
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 4.3e-66 256.9 584 38.2
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 5.6e-66 256.5 800 32.1
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 6.2e-65 253.1 809 32.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.4e-64 251.9 800 30.4
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 2.4e-64 251.1 800 30.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 3.1e-64 250.8 692 34.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 6.8e-64 249.6 659 35.5
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-63 248.8 662 36.4
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 3.4e-63 247.3 678 34.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 5.8e-63 246.5 661 36.2
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.3e-62 245.4 661 36.0
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 1.9e-61 241.5 689 33.7
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.1e-61 239.6 242 57.4
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.2e-60 238.8 495 40.2
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.8e-60 236.1 683 34.8
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 5.1e-59 233.4 552 36.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 5.6e-58 229.9 736 31.7
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.1e-57 228.0 580 34.5
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.1e-56 225.7 742 32.6
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.2e-55 222.2 661 31.8
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 6.6e-51 206.5 678 32.7
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 6.6e-51 206.5 531 34.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 8.4e-46 189.5 657 29.4
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.5e-42 177.9 302 39.1
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.7e-41 174.1 642 31.5
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 4.8e-41 173.7 229 52.8
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 2.2e-38 164.9 746 30.0
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 2.1e-36 158.3 432 36.6
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 3.9e-35 154.1 635 28.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 2.0e-31 141.7 587 30.2
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 7.9e-28 129.8 509 28.9
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 5.1e-27 127.1 169 49.1
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 3.3e-26 124.4 97 64.9
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 3.3e-26 124.4 628 26.4
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 4.8e-25 120.6 137 51.8
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 5.0e-22 110.5 117 53.8
vmacro01916 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 3.7e-17 94.4 127 50.4
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 3.4e-15 87.8 72 61.1
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 8.5e-14 83.2 398 26.9
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 1.9e-13 82.0 89 49.4
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 2.0e-10 72.0 62 58.1
Prupe.8G157000 Prunus persica HOM05D004882 ORTHO05D005551 3.1e-08 64.7 76 52.6
Zm00001eb205120 Zea mays HOM05D004882 ORTHO05D005551 3.1e-08 64.7 101 38.6
Zm00001eb090710 Zea mays HOM05D004882 ORTHO05D005551 2.0e-07 62.0 163 30.7
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.4e-07 61.2 66 57.6
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 5.9e-07 60.5 38 76.3
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 1.0e-06 59.7 45 62.2
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 1.7e-06 58.9 41 70.7
Nn5g30227 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.9e-06 58.2 46 65.2
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 8.5e-06 56.6 46 54.3


User provided reference genes

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