Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 6.1e-90 334.3 195 100.0
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 2.3e-89 332.4 195 92.8
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 3.0e-44 182.6 234 54.7
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 1.7e-36 156.8 226 46.0
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 1.5e-35 153.7 261 40.2
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.5e-35 152.9 227 43.6
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.8e-34 149.4 209 48.3
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 3.6e-34 149.1 219 46.1
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 6.9e-33 144.8 195 44.6
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 9.0e-33 144.4 229 42.8
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 1.5e-32 143.7 221 42.5
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 1.5e-32 143.7 227 42.7
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 9.9e-32 141.0 220 46.4
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.8e-31 139.0 220 43.2
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 1.9e-30 136.7 224 47.8
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 5.4e-30 135.2 220 40.9
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 2.1e-29 133.3 225 41.8
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 1.7e-28 130.2 229 38.9
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 5.1e-28 128.6 222 41.0
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.5e-27 127.1 212 42.5
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 3.3e-27 125.9 223 46.2
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 1.6e-26 123.6 222 40.1
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.6e-26 123.6 223 40.4
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 2.8e-26 122.9 188 48.4
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 3.6e-26 122.5 156 50.0
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 3.6e-26 122.5 223 40.4
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 4.8e-26 122.1 231 38.1
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.4e-25 120.6 231 39.0
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 1.8e-25 120.2 229 38.4
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 2.4e-25 119.8 225 40.0
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 6.9e-25 118.2 234 38.0
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 6.9e-25 118.2 225 38.7
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 1.2e-24 117.5 227 37.0
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 2.6e-24 116.3 231 38.1
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 3.4e-24 115.9 221 39.4
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 9.9e-24 114.4 206 37.9
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 1.7e-23 113.6 101 58.4
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 3.8e-23 112.5 262 34.0
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 6.4e-23 111.7 222 38.7
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 9.3e-22 107.8 196 38.3
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 1.2e-21 107.5 78 67.9
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 6.7e-20 101.7 78 66.7
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 3.3e-19 99.4 227 36.6
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 5.6e-19 98.6 225 34.2
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 1.6e-18 97.1 102 52.9
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 1.6e-18 97.1 232 35.8
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 2.1e-18 96.7 212 42.0
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 2.1e-18 96.7 72 66.7
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 4.0e-17 92.4 205 37.6
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 5.3e-17 92.0 201 33.8
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 5.3e-17 92.0 226 33.6
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 9.0e-17 91.3 80 60.0
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.2e-16 90.9 210 36.2
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 9.9e-16 87.8 222 38.7
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 6.4e-15 85.1 216 36.6
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 1.1e-14 84.3 220 37.7
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 3.2e-14 82.8 229 32.8
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 4.2e-14 82.4 222 33.3
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 4.2e-14 82.4 228 36.8
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 5.5e-14 82.0 239 33.1
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 7.1e-14 81.6 230 32.2
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 7.1e-14 81.6 206 32.5
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 1.2e-13 80.9 223 33.6
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 1.2e-13 80.9 221 29.0
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.6e-13 79.0 212 31.1
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 6.0e-13 78.6 222 36.5
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 7.9e-13 78.2 200 30.0
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 7.9e-13 78.2 222 34.7
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 7.9e-13 78.2 222 34.7
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 1.3e-12 77.4 92 44.6
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 1.8e-12 77.0 218 35.8
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 1.8e-12 77.0 108 42.6
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 2.3e-12 76.6 151 37.7
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 3.0e-12 76.3 223 32.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 6.7e-12 75.1 197 34.5
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 8.7e-12 74.7 210 35.7
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.1e-11 74.3 68 58.8
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 1.9e-11 73.6 84 46.4
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 1.3e-10 70.9 220 35.9
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 1.3e-10 70.9 75 48.0
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 3.7e-10 69.3 222 35.1
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 4.8e-10 68.9 83 51.8
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 4.8e-10 68.9 210 29.5
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 4.8e-10 68.9 227 33.5
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 1.1e-09 67.8 221 29.0
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 1.4e-09 67.4 98 39.8
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 1.8e-09 67.0 69 56.5
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.1e-09 66.2 70 52.9
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 6.9e-09 65.1 70 55.7
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.2e-08 64.3 63 57.1
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 2.6e-08 63.2 78 50.0
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 4.5e-08 62.4 105 39.0
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 4.5e-08 62.4 218 28.9
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 7.6e-08 61.6 75 48.0
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 1.7e-07 60.5 216 31.0
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 2.9e-07 59.7 46 65.2
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 2.9e-07 59.7 52 59.6
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 6.5e-07 58.5 83 47.0
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 9.3e-06 54.7 208 26.0


User provided reference genes

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